BtaEX0000391 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr11:99497791-99498484:+
Coord C1 exon
chr11:99497791-99497858
Coord A exon
chr11:99498041-99498189
Coord C2 exon
chr11:99498289-99498484
Length
149 bp
Sequences
Splice sites
3' ss Seq
ATGGCATTTGTGATTGTCAGAAA
3' ss Score
2.79
5' ss Seq
CATGTGAGG
5' ss Score
5.25
Exon sequences
Seq C1 exon
CCCAGCATCCTGGAAACCTGTGCCCTAATCATGAAGATAATTTGCTTGGAGATATACTATGTAGTTAA
Seq A exon
AAAGAGTGATTGTGAAGCAAACTCCTTGTGCTCGGGATTTTATGGAGAAGGAACCCTGGAAAAGGCCTCAGCCTAACCCATTATGTTGAGCAAGAAGTGTGAGCCCCACACAATGGAGCTGATCTGGAGCCGTCTGCCTTTAAGCCCAT
Seq C2 exon
GGGCTCATTAGACCAATCATTAAAAGATACACTCAAGAAATTTTCCAGCGAGAAGCGCTTTGCCTACTGGTCGGGGTATGTCAAGTCCTTGGCAGTTCACATGGCCGACACAGAGGGCAGCAGCTGCACCTCCCTGGTAGAGTATCAAATGCTGGTCTCTGCCTGGAGGATGTTTCTCATCATTGCCACCAGTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010613_MULTIEX2-2/16=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF118943=DUF3414=FE(4.4=100)
A:
PF118943=DUF3414=PD(2.2=42.3)
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000014030fB79
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGAAACCTGTGCCCTAA
R:
GTGACTGGTGGCAATGATGAGA
Band lengths:
257-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development