BtaINT0002241 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr11:99497791-99498484:+
Coord C1 exon
chr11:99497791-99497858
Coord A exon
chr11:99497859-99498288
Coord C2 exon
chr11:99498289-99498484
Length
430 bp
Sequences
Splice sites
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
3' ss Seq
TTTTTCTCCTGACACCCTAGGGG
3' ss Score
7.95
Exon sequences
Seq C1 exon
CCCAGCATCCTGGAAACCTGTGCCCTAATCATGAAGATAATTTGCTTGGAGATATACTATGTAGTTAA
Seq A exon
GTGAGTCCTTTCCCCTTTTGAGACTTTAATCAGAGGTTTGTGGCGGGGGGACCCATGGAGTCTACTGCTGAGGGCATGGCCAAATGAGCCCAGACAGAGGAGAGAGCTGGTTTGGAGCCATTTCTGGAGGGCCACGGATCCGTGTCCTTGGTCAGTCCATCGATGGCATTTGTGATTGTCAGAAAGAGTGATTGTGAAGCAAACTCCTTGTGCTCGGGATTTTATGGAGAAGGAACCCTGGAAAAGGCCTCAGCCTAACCCATTATGTTGAGCAAGAAGTGTGAGCCCCACACAATGGAGCTGATCTGGAGCCGTCTGCCTTTAAGCCCATGTGAGGTTGCTTTCTCTGCCTCAGCAAGGGTCAGTGCCCGTCACACTCCCGTCGGCATTTCTGCTAACCGTAGGTTTTATTTTTCTCCTGACACCCTAG
Seq C2 exon
GGGCTCATTAGACCAATCATTAAAAGATACACTCAAGAAATTTTCCAGCGAGAAGCGCTTTGCCTACTGGTCGGGGTATGTCAAGTCCTTGGCAGTTCACATGGCCGACACAGAGGGCAGCAGCTGCACCTCCCTGGTAGAGTATCAAATGCTGGTCTCTGCCTGGAGGATGTTTCTCATCATTGCCACCAGTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010613:ENSBTAT00000014030:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF118943=DUF3414=FE(4.4=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCATCCTGGAAACCTGTGC
R:
GTGACTGGTGGCAATGATGAGA
Band lengths:
262-692
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development