HsaEX0044798 @ hg19
Exon Skipping
Gene
ENSG00000160991 | ORAI2
Description
ORAI calcium release-activated calcium modulator 2 [Source:HGNC Symbol;Acc:21667]
Coordinates
chr7:102073982-102079494:+
Coord C1 exon
chr7:102073982-102074108
Coord A exon
chr7:102076672-102076780
Coord C2 exon
chr7:102079391-102079494
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGAATTCTCCCCAAGGGA
3' ss Score
5.85
5' ss Seq
CTGGTAATT
5' ss Score
5.99
Exon sequences
Seq C1 exon
ACCCCGCGCGACCGGCGGAAGGAGGGAGGGGGCCGCGCTCGGCGCCCCGGCCGGGCCACTGGGCCACAGGCCACGCGGCCACGCAGTCCGAGCGGGAGCCGAGCCGGGCGGGGCGAGGGCAGCTCCG
Seq A exon
GGAAGGAACGTCCCAGGGATGGAAGTGCTTGGATGCGGTGCTGCTGGCTGCGGATGTGCGCAAGGAGATGGGATGGAGAGCCTGAGTTGGCATTCGTATAAATGACCTG
Seq C2 exon
CCTGGCTCCCACCATGAGTGCTGAGCTTAACGTGCCTATCGACCCCTCTGCTCCTGCCTGCCCTGAGCCCGGCCATAAGGGCATGGATTACCGGGACTGGGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160991-'1-8,'1-5,2-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.023
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF078567=Orai-1=PU(17.8=45.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)