HsaEX0044800 @ hg19
Exon Skipping
Gene
ENSG00000175938 | ORAI3
Description
ORAI calcium release-activated calcium modulator 3 [Source:HGNC Symbol;Acc:28185]
Coordinates
chr16:30957808-30969195:+
Coord C1 exon
chr16:30957808-30959889
Coord A exon
chr16:30964506-30964781
Coord C2 exon
chr16:30967521-30969195
Length
276 bp
Sequences
Splice sites
3' ss Seq
ATCCCCTCTTGTCCCTGCAGGTG
3' ss Score
13.62
5' ss Seq
CTGGTTGGT
5' ss Score
4.67
Exon sequences
Seq C1 exon
GTGTGAGGGGACTGGACCAGCTTGGACTGAGACCTGAGACCGGGCCGGTGGGCGCCCATTTGGGACTGCGCCACCCCCAGGCTTGTTCTTGTTTTACTGTATTGAGCGGCGGCACCCGCCGGACCCGCATTATGGCTGGGGGCGCCAGCCCAAGAATGGGGACCATGGGACTCCTCCAGCCTGGCTCTTCCCACTCTTTCATCGTCATGGAAACTTGTATCCCATTTGCCCAGGGAACTGCCACTCCTGGTTGCCATGGAAATAGCAGCCAACGGACACCTCCCGATGCCAGTGCTAAGGCTGGAAATGGCCCCCTCTTAGTTGCCATGGGAACCTAGTAACAGACTCTGCTGGCCCTCCTTCCCTGCCCCTTCCTCGAGCGCGGGGTGGGGCTTCGGGACCCCGGGGATGAGCCGGGCCAGGTCCCGCCCCTCCGCGCAGGCCTCCGGGGGGCCGGGGCTTACCATGTAGGGGAGGGGAGATCTATCCACATACCTCAG
Seq A exon
GTGGCCATGGTGGAGGTGCAGCTGGAGAGTGACCACGAGTACCCACCAGGCCTGCTGGTGGCCTTCAGTGCCTGCACCACCGTGCTGGTGGCTGTGCACCTCTTTGCACTCATGGTCTCCACGTGTCTGCTGCCCCACATTGAAGCTGTGAGCAACATCCACAACCTCAACTCTGTCCACCAGTCGCCACACCAGAGACTGCACCGCTACGTGGAGCTGGCCTGGGGCTTCTCCACTGCCCTGGGCACCTTTCTCTTCCTTGCTGAAGTTGTCCTG
Seq C2 exon
AGATAAGGAAACAGGCCCAAGAAGGCTGAAGATCTTGCCCAAAACCACACAGCTAGTCCATGAAACTGAACTTGGACTATCTACCCCTCACACGGGAATCTCTCTTTGATTTGAGAAAAGGAACCAGTGCCTTTCAACTGGAACAGAAAGGAATCTGATCTCAACACCTATGCCTCCACGTAAATTATTTTTTTCAGCCTTATTTCCCTCAAAATTGTAGAGTCCTAATCTTCTTCTATCTTGTGGTGTGAGACCTTGGATAAGTCTCCCTTCCACCTTTTCCTATTACTTAAAATGGTGAATTTGCATAAACCAGGCTCTAAGGGTCTTTTCTGCACTGTTCGGATGTGTACAAATTGACATCCAAGTTTAAAGGAAGACTCTGAAACTTAGGTCAATGACTTGCCCAAGGCCATATAGCGAGGGCCTGATGTACACATATCAGGAGCTTGGGGCATCCTCAGCTCAGGAAAAGGGACCTCCTGGGAGTGCCTGCGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175938_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.161 C2=NA
Domain overlap (PFAM):
C1:
NA
A:
PF078567=Orai-1=PD(84.9=91.8),PF105414=KASH=WD(100=23.6)
C2:
PF078567=Orai-1=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAATAGCAGCCAACGGACA
R:
CTAGCTGTGTGGTTTTGGGCA
Band lengths:
299-575
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)