HsaEX0044800 @ hg38
Exon Skipping
Gene
ENSG00000261487 | AC135048.13
Description
NA
Coordinates
chr16:30951166-30956511:+
Coord C1 exon
chr16:30951166-30951420
Coord A exon
chr16:30953185-30953331
Coord C2 exon
chr16:30956200-30956511
Length
147 bp
Sequences
Splice sites
3' ss Seq
ATCCCCTCTTGTCCCTGCAGGTG
3' ss Score
13.62
5' ss Seq
GCTGTGAGC
5' ss Score
3.2
Exon sequences
Seq C1 exon
GCCCAGAGCAATCGAATGGACCCTACAAGAACCAGGGATGGGGAGAGAGTGGGCTTCTGAAACTCAGGTGGCCTAAGTTAGAATAGCATTATACAAATTGTATCCAGCTGTCACTAAGCACCAGGCACTGCCCTCAGTGCCTTTATATACATCATCTGTTAGCCTACAAAGTGGGTACTGCTACTCTGGCCATTTTACAGATGAGGAAACTGAGGATCAGAGATGTTAAGACACCTGCCCAAGGTCCCACAGCAA
Seq A exon
GTGGCCATGGTGGAGGTGCAGCTGGAGAGTGACCACGAGTACCCACCAGGCCTGCTGGTGGCCTTCAGTGCCTGCACCACCGTGCTGGTGGCTGTGCACCTCTTTGCACTCATGGTCTCCACGTGTCTGCTGCCCCACATTGAAGCT
Seq C2 exon
AGATAAGGAAACAGGCCCAAGAAGGCTGAAGATCTTGCCCAAAACCACACAGCTAGTCCATGAAACTGAACTTGGACTATCTACCCCTCACACGGGAATCTCTCTTTGATTTGAGAAAAGGAACCAGTGCCTTTCAACTGGAACAGAAAGGAATCTGATCTCAACACCTATGCCTCCACGTAAATTATTTTTTTCAGCCTTATTTCCCTCAAAATTGTAGAGTCCTAATCTTCTTCTATCTTGTGGTGTGAGACCTTGGATAAGTCTCCCTTCCACCTTTTCCTATTACTTAAAATGGTGAATTTGCATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000261487-'2-3,'2-2,3-3
Average complexity
C3*
Mappability confidence:
80%=67=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAACCAGGGATGGGGAGAG
R:
CCTTCTTGGGCCTGTTTCCTT
Band lengths:
254-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development