HsaINT1002493 @ hg38
Intron Retention
Gene
ENSG00000261487 | AC135048.13
Description
NA
Coordinates
chr16:30953185-30956511:+
Coord C1 exon
chr16:30953185-30953460
Coord A exon
chr16:30953461-30956199
Coord C2 exon
chr16:30956200-30956511
Length
2739 bp
Sequences
Splice sites
5' ss Seq
CTGGTTGGT
5' ss Score
4.67
3' ss Seq
CTTTATCATTTTCATTTCAGAGA
3' ss Score
8.41
Exon sequences
Seq C1 exon
GTGGCCATGGTGGAGGTGCAGCTGGAGAGTGACCACGAGTACCCACCAGGCCTGCTGGTGGCCTTCAGTGCCTGCACCACCGTGCTGGTGGCTGTGCACCTCTTTGCACTCATGGTCTCCACGTGTCTGCTGCCCCACATTGAAGCTGTGAGCAACATCCACAACCTCAACTCTGTCCACCAGTCGCCACACCAGAGACTGCACCGCTACGTGGAGCTGGCCTGGGGCTTCTCCACTGCCCTGGGCACCTTTCTCTTCCTTGCTGAAGTTGTCCTG
Seq A exon
GTTGGTTGGGTCAAGTTTGTGCCCATTGGGGCTCCCTTGGACACACCGACCCCCATGGTGCCCACATCCCGGGTGCCCGGGACTCTGGCACCAGTGGCTACCTCCCTTAGTCCAGCTTCCAATCTCCCACGGTCCTCTGCGTCTGCAGCACCGTCCCAAGCTGAGCCAGCCTGCCCACCCCGGCAAGCCTGTGGTGGTGGTGGGGCCCATGGGCCAGGCTGGCAAGCAGCCATGGCCTCCACAGCCATCATGGTACCCGTGGGGCTCGTGTTTGTGGCCTTTGCCCTGCATTTCTACCGCTCCTTGGTGGCACACAAGACAGACCGCTACAAGCAGGAACTAGAGGAACTGAATCGCCTGCAGGGGGAGCTGCAGGCTGTGTGAGACTGGTGTTAGCCACCGCTCACTGCAAGCACTGCCTCCCTCCGGGGTCTGTAAGAGGCCGCAGGGGCCTACAGACCTCATCCCCCCATCCCCTGGCTGGAGCCACTTCCAGTGGCCACTCTCAGGCAGAGTTCAGATTCCTGCCCGCAGGGTCCTCTGGGCTGGGCCTTGGGGCAGCTCCCACATTCCCAGGGATTTTCCCCATCAGTCTGTCCCTTGGGTTTTGCAAGCTACTCTGCACCTGGGCTGGCCTCAGTTGAAGGATCATGCAGTAGATAGAGGGGAGGCAGGGAGAGCTTGTGGGACCTTCAGTGCTGACTTTAGCCACCATTTCCATTCCTATACAGGATGTGAAGGTCAGAAGGCAGCCAATTGTTGGTTTAATTTTTTTTTTTTTTTGAGACAGTCTGTTTCCCAGGCTGGAGTGTAGTGATACAGTCACAGCTCACTGTAGCCTCGACCTTCCAGGCTCAAAAGATGCTCCCACCACAGCCTCCCAGGTAGTGAGTAGCTGGTACTACAGGTGTGTGCTGCCACACCCGACTAATTTTTTTGTAGAGACGGGGTTTCGCTGTTCCCAGGCTGGTCTCAAACTCCTGGGCTCAAGTGAACCTCCCGCCTCGGCCTCCCAAAGTGCTGGGATTCCTTTCTTTATTTCTGTAGAATCTATTTTATGGTTGGCATTTTGGGGGAAGATTTCGATGGGTTCCACATTCTTGCTTTAGTTGTTGTAGAGGGATTTGGGTGTTTCTACCCAAGGCATTGGTCTAGCTTTTCCTACAATGAACCTATCTTTGGAGGTTCAAGCTCCCCACCTTCCCCCACTGTGGTGACCTGTGGCCACTTGCAGAAGGGATGGTGCCTGACCCACTGCCCTAGCCCCACGCTATGCACCAAACTTGTTCTCCCCGTCCTGGTCCAGGGCTGGGGTCTTTAGAGACTGACAGCCTCTGCCCCAGGCCTGAGTCCTTAGCAAGGGTTGGGTAAGGAGGTTTTAAGGGAGAAGGTCCAGTCCTTAGCCCTTGAAATACAAAGCTCTTCTGACACTGAATTTGGATGCACCTTGTTTTATATAATAAATCGTGTTTCACAGATGTCCCTGTTGCTGTGAAGGGGATGCAGGGCAGGCCTTCTTAGGATAACTTTACTTGTTCCCAAGAGCCGGGTGGTGGCAAGTTTGGGTGGACAGGACCTGGGAGGGGAGTGGGTTTCAGGTGTAACCCTGTCAGATGCTAACAAGGGCCAACAGCTTCTGAATGGGGAGAGTTATTCCAAGGCTACAGGCTTTGAACTCTTGTCCCTGAGTTCAGAGTCTCTATCTCTTCCACTGAGTATTTATTTATTTAGAGACGGAGTCTTGTGTTGCCCAGGCTGGAGTGCAGTGGTGCGATCTCAGCTCACTGTAACCTCCGTCTCCCAAGTTCAAGCAATTCTCCTGCCTCAGCCACCAGAGTAGCTGGGATTACAAGTGTGTGCCGCCACACCCGGCTAATTTTTATATTTTTATTAGAGACGGGGTTTCGCCATGTTGGCCAAGCTGGTCTCAAACTTCTGACCTCAGGTGATCCACCTGTCTGGCCTCCCGAAGTGCTGGGATTACAGGCATGAGCCACCACACCCAGCCCTCCCTGAGTGTTTAGTATAAGCACTCTTTTTTTTTTTTTTTTTTTGAGACCGAGTCTCGCTCTGTCTTGCACTGTCGCCCAGGCTGGAGTACAGTGGCATGATCTCGGCTCACTGCAAGCGCCGCCTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGTGCCCACCACCACGCTCGGCTAATTTTGTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTGTTAGCCAGGATGGTCTTGATCTCCTGACCTAGTGATCCCCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCATCGCGCCCAGCCGAGACAGTCTCACTCTTTTGCCCAGGCTGGAGTGCAGCTGTGCAATCTTGGCTCACTGCAGCTTTGACCTCCCAGGCTCATGAGCCTCCCACCTCAGCCTCCCAAATAGCTGGCACCACAGGACGTCCCACCAACCCAGCTAATTAATTTTTTTTTTTTTTTGTAGAGAGGAGGGTCTCACTATGTTGTCCAGGCTGGTCTTGAACTCCTGGGCTCAAGTGATCCTCCCACCTTGGCCTCCCAAAGTGCTGAGATTACAAGTGTTAGCCACTGCACCTGGCCTCAAGTTTCTTTCTTGAGCAACTACCACATACTAGGGGACTTTCATAGGTTATCTTATTTAACTCTCACAACACCTTAAGCGTTAAGTCTTTATCATTTTCATTTCAG
Seq C2 exon
AGATAAGGAAACAGGCCCAAGAAGGCTGAAGATCTTGCCCAAAACCACACAGCTAGTCCATGAAACTGAACTTGGACTATCTACCCCTCACACGGGAATCTCTCTTTGATTTGAGAAAAGGAACCAGTGCCTTTCAACTGGAACAGAAAGGAATCTGATCTCAACACCTATGCCTCCACGTAAATTATTTTTTTCAGCCTTATTTCCCTCAAAATTGTAGAGTCCTAATCTTCTTCTATCTTGTGGTGTGAGACCTTGGATAAGTCTCCCTTCCACCTTTTCCTATTACTTAAAATGGTGAATTTGCATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000261487:ENST00000562642:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains