HsaEX0044835 @ hg19
Exon Skipping
Gene
ENSG00000115947 | ORC4L
Description
origin recognition complex, subunit 4 [Source:HGNC Symbol;Acc:8490]
Coordinates
chr2:148716360-148730398:-
Coord C1 exon
chr2:148730308-148730398
Coord A exon
chr2:148717811-148717875
Coord C2 exon
chr2:148716360-148716435
Length
65 bp
Sequences
Splice sites
3' ss Seq
TAATATATTTATCATTTCAGACC
3' ss Score
7.47
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
ACACTTAAGTGAGCTGCTGAAAAGAACTGCTCTCCATGGAGAGAGTAACTCTGTCCTTATTATCGGACCCCGAGGATCAGGAAAAACTATG
Seq A exon
ACCATACACACAACCCATAAAATATTAGTGGGCTGATCCAAGCAAAGCATAAGTTGGTGTTTAAA
Seq C2 exon
TTAATAAATCATGCTTTGAAAGAACTCATGGAAATAGAAGAAGTGAGTGAAAATGTATTACAAGTTCACTTAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115947_MULTIEX3-1/6=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.182 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=FE(19.4=100)
A:
PF131911=AAA_16=PD(19.6=83.3)
C2:
PF131911=AAA_16=FE(16.1=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTAAGTGAGCTGCTGAAAAGA
R:
ATTTTCACTCACTTCTTCTATTTCCA
Band lengths:
143-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)