HsaEX0044835 @ hg38
Exon Skipping
Gene
ENSG00000115947 | ORC4
Description
origin recognition complex subunit 4 [Source:HGNC Symbol;Acc:HGNC:8490]
Coordinates
chr2:147958791-147972829:-
Coord C1 exon
chr2:147972739-147972829
Coord A exon
chr2:147960242-147960306
Coord C2 exon
chr2:147958791-147958866
Length
65 bp
Sequences
Splice sites
3' ss Seq
TAATATATTTATCATTTCAGACC
3' ss Score
7.47
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
ACACTTAAGTGAGCTGCTGAAAAGAACTGCTCTCCATGGAGAGAGTAACTCTGTCCTTATTATCGGACCCCGAGGATCAGGAAAAACTATG
Seq A exon
ACCATACACACAACCCATAAAATATTAGTGGGCTGATCCAAGCAAAGCATAAGTTGGTGTTTAAA
Seq C2 exon
TTAATAAATCATGCTTTGAAAGAACTCATGGAAATAGAAGAAGTGAGTGAAAATGTATTACAAGTTCACTTAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115947_MULTIEX1-1/7=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.182 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=FE(19.4=100)
A:
PF131911=AAA_16=PD(19.6=83.3)
C2:
PF131911=AAA_16=FE(16.1=100)
Main Inclusion Isoform:
ENST00000535373fB4885
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTAAGTGAGCTGCTGAAAAGA
R:
ATTTTCACTCACTTCTTCTATTTCCA
Band lengths:
143-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development