HsaEX0044909 @ hg19
Exon Skipping
Gene
ENSG00000070882 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:16370]
Coordinates
chr7:24911572-24932240:-
Coord C1 exon
chr7:24931996-24932240
Coord A exon
chr7:24926392-24926511
Coord C2 exon
chr7:24911572-24911688
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTCAAATGGTTTCCTTGCAGTCC
3' ss Score
7.27
5' ss Seq
CTGGTTTGG
5' ss Score
1.28
Exon sequences
Seq C1 exon
GTTTTAGGGTTTCCTTTGGGCCACCCAAAATGTTTTTTAAATACTTTGGATAAGAGCTAAACCACCTGCCACTGGGGACTTCCATACTCTCGGCTCCCTTGTCATCTGATGGCATTTTGATTGTCTCGAGGCCAAGTGACTTGCTGTCCATGATGAGTGATGAGAAGAACCTTGGTGTGTCCCAAAAATTGGTATCACCTTCAAGGAGCACAAGTAGCTGCTCTTCCAAGCAAGGAAGTCGACAG
Seq A exon
TCCTGGGGATGAAAGGCTGATTAGAGTTGATTCATGAGAGACAAGGAACAGAGGAATGGAACAGCCCAGTTCTGCCAGGCCCCACGACAGGATTTGAGAGAAGCCTTCACAAATGTTCTG
Seq C2 exon
GACAGCTGGGAAGTGGTGGAAGGACTGAGGGGGGAGATGAATTACACCCAGGAGCCACCAGTTCAGAAAGGATTTTTGCTGAAAAAGAGGAAGTGGCCCTTAAAAGGCTGGCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000070882-'9-12,'9-11,10-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.587 A=1.000 C2=0.047
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF154091=PH_8=PU(16.7=38.5)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACTTCCATACTCTCGGCT
R:
CCTTTCTGAACTGGTGGCTCC
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)