HsaEX0044909 @ hg38
Exon Skipping
Gene
ENSG00000070882 | OSBPL3
Description
oxysterol binding protein like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr7:24871953-24892621:-
Coord C1 exon
chr7:24892377-24892621
Coord A exon
chr7:24886546-24886892
Coord C2 exon
chr7:24871953-24872069
Length
347 bp
Sequences
Splice sites
3' ss Seq
GTCAAATGGTTTCCTTGCAGTCC
3' ss Score
7.27
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTTTTAGGGTTTCCTTTGGGCCACCCAAAATGTTTTTTAAATACTTTGGATAAGAGCTAAACCACCTGCCACTGGGGACTTCCATACTCTCGGCTCCCTTGTCATCTGATGGCATTTTGATTGTCTCGAGGCCAAGTGACTTGCTGTCCATGATGAGTGATGAGAAGAACCTTGGTGTGTCCCAAAAATTGGTATCACCTTCAAGGAGCACAAGTAGCTGCTCTTCCAAGCAAGGAAGTCGACAG
Seq A exon
TCCTGGGGATGAAAGGCTGATTAGAGTTGATTCATGAGAGACAAGGAACAGAGGAATGGAACAGCCCAGTTCTGCCAGGCCCCACGACAGGATTTGAGAGAAGCCTTCACAAATGTTCTGGTTTGGAACCTTGAGCTTGGCTAATACCATGCTTAACACTGCCATCGTCTTTCCTCTTTCAATTGCTTCATTGGTTAAAAAAGTATATGGTTGTTTAAGTACTGGGTCCTGTTTATACATCCTTTTATTTCTCATAGCACCTAGGACAGGGCTTTGCATGTAGAAGATACAAATCGTCGGACTGAATTTATTGAAAACCAGCGACAAATATCCTTCTATTGGGGCAG
Seq C2 exon
GACAGCTGGGAAGTGGTGGAAGGACTGAGGGGGGAGATGAATTACACCCAGGAGCCACCAGTTCAGAAAGGATTTTTGCTGAAAAAGAGGAAGTGGCCCTTAAAAGGCTGGCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000070882_MULTIEX2-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.617 A=1.000 C2=0.045
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF154091=PH_8=PU(16.7=38.5)
Main Inclusion Isoform:
ENST00000313367fB4895
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGGGTTTCCTTTGGGCCAC
R:
CCAGCCTTTTAAGGGCCACTT
Band lengths:
353-700
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development