HsaEX0045153 @ hg38
Exon Skipping
Gene
ENSG00000101104 | PABPC1L
Description
poly(A) binding protein cytoplasmic 1 like [Source:HGNC Symbol;Acc:HGNC:15797]
Coordinates
chr20:44936637-44938191:+
Coord C1 exon
chr20:44936637-44936730
Coord A exon
chr20:44936894-44936976
Coord C2 exon
chr20:44938061-44938191
Length
83 bp
Sequences
Splice sites
3' ss Seq
AAGCTGGCTCTATTCTCTAGGCA
3' ss Score
5.65
5' ss Seq
GAGGTTGGG
5' ss Score
2.53
Exon sequences
Seq C1 exon
GTCCAGGAGCCGGCTGTGCACATCCCAGGACAGGAGCCCCTGACCGCGTCCATGCTGGCTGCGGCGCCCCTGCATGAGCAAAAGCAGATGATTG
Seq A exon
GCACCTGTTATCTTGTCTTAAAACGCTGGTCAGACTGGATGGTCCTGAGCTTTCTTCCACTGCTGCTGTCCTGTGACTTTGAG
Seq C2 exon
GGGAGCGTCTCTACCCCCTTATCCATGATGTCCACACCCAGCTGGCTGGCAAGATCACGGGCATGCTGCTGGAGATTGACAACTCAGAGCTGTTGCTCATGCTGGAGTCTCCAGAATCCCTCCATGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101104_MULTIEX2-2/8=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.409 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0065813=PABP=PU(27.8=62.5)
A:
NO
C2:
PF0065813=PABP=FE(59.7=100)
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCACATCCCAGGACAG
R:
TGAGTTGTCAATCTCCAGCAGC
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development