Special

ENSG00000101104 @ hg38

Biotype
protein_coding
Gene Symbol
PABPC1L
Description
poly(A) binding protein cytoplasmic 1 like [Source:HGNC Symbol;Acc:HGNC:15797]
Coordinates
chr20:44910062-44959035:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
3
chr20:44930518-44930520
+
80.4
100
0
Alternative 3'ss
61
chr20:44930460-44930520
+
16.73
100
0
Alternative 3'ss
0
NA
+
17.35
96.86
0
Alternative 3'ss
15
chr20:44933057-44933071
+
82.65
96.86
0
Alternative 5'ss
0
NA
+
88.53
49.9
0
Alternative 5'ss
102
chr20:44932433-44932534
+
11.47
49.9
0
Alternative 5'ss
0
NA
+
1.24
60.69
0
Alternative 5'ss
4
chr20:44933182-44933185
+
98.76
60.69
0
Exon Skipping
63
chr20:44934501-44934563
+
2.16
38.43
0
Exon Skipping
75
chr20:44938674-44938748
+
71.77
58.18
0
Exon Skipping
83
chr20:44936894-44936976
+
8.92
40.98
0
Exon Skipping
131
chr20:44938061-44938191
+
96.72
25.6
0
Exon Skipping
62
chr20:44952643-44952704
+
25.91
48.96
0
Exon Skipping
91
chr20:44932342-44932432
+
67.75
97.23
0
Exon Skipping
129
chr20:44933057-44933185
+
95.37
69.25
0
Exon Skipping
82
chr20:44950677-44950758
+
2.21
46.99
0
Exon Skipping
182
chr20:44951899-44952080
+
8.8
49.4
0
Intron Retention
1330
chr20:44936731-44938060
+
12.1
36.54
0
Intron Retention
6203
chr20:44924257-44930459
+
11.67
62.07
0
Intron Retention
1615
chr20:44930727-44932341
+
76.6
100
0
Intron Retention
639
chr20:44932433-44933071
+
93.75
98.63
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000054582 Pabpc1l 1-to-1
Mouse mm9 ENSMUSG00000054582 Pabpc1l 1-to-1
Rat rn6 ENSRNOG00000012750 Pabpc1l 1-to-1
Cow bosTau6 ENSBTAG00000016849 PABPC1L 1-to-1
Chicken galGal3 ENSGALG00000004123 PABPC1L 1-to-1
Zebrafish danRer10 ENSDARG00000002597 pabpc1l 1-to-1
Fruitfly dm6 FBgn0265297 pAbp 6-to-1