HsaALTD1008219-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000101104 | PABPC1L
Description
poly(A) binding protein cytoplasmic 1 like [Source:HGNC Symbol;Acc:HGNC:15797]
Coordinates
chr20:44933135-44935497:+
Coord C1 exon
chr20:44933135-44933181
Coord A exon
chr20:44933182-44933185
Coord C2 exon
chr20:44935391-44935497
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
TGTTTTGTTTTGTTTTGCAGCCA
3' ss Score
10.68
Exon sequences
Seq C1 exon
GGCAGGCCTCCACCCAGGTGCCACGCACGGTGCCTCATACCCAGAGA
Seq A exon
GTAG
Seq C2 exon
CCAACATTGGTACTCAGACCACAGGACCCAGTGGGGTAGGATGCTGTACACCAGGCCGGCCGCTCCTGCCGTGCAAATGTTCCTCAGCAGCACATAGCACCTATCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101104-24-39,25-39-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.995 A=NA C2=0.352
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGCCTCATACCCAGAGA
R:
TGAGGAACATTTGCACGGCAG
Band lengths:
106-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains