HsaEX0045145 @ hg38
Exon Skipping
Gene
ENSG00000101104 | PABPC1L
Description
poly(A) binding protein cytoplasmic 1 like [Source:HGNC Symbol;Acc:HGNC:15797]
Coordinates
chr20:44933072-44935497:+
Coord C1 exon
chr20:44933072-44933185
Coord A exon
chr20:44934501-44934563
Coord C2 exon
chr20:44935391-44935497
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTCGTTCCTCCTCCCGCTAGCCC
3' ss Score
8.45
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GTGCCTCAATGGTCCGGCCACCAGTTGTGCCTCGGCGCCCCCCGGCCCACATCAGCAGTGTCAGGCAGGCCTCCACCCAGGTGCCACGCACGGTGCCTCATACCCAGAGAGTAG
Seq A exon
CCCTTGGCAACTGCCATTCTACTTTGTCTCTGTGAATTTGACTGTTCTTGCTTGGTACCTCAT
Seq C2 exon
CCAACATTGGTACTCAGACCACAGGACCCAGTGGGGTAGGATGCTGTACACCAGGCCGGCCGCTCCTGCCGTGCAAATGTTCCTCAGCAGCACATAGCACCTATCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101104_MULTIEX3-5/5=4-C2
Average complexity
S
Mappability confidence:
88%=88=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.992 A=0.273 C2=0.352
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000217073fB4924
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGGTGCCTCATACCCAGAG
R:
CGATAGGTGCTATGTGCTGCT
Band lengths:
132-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development