Special

ENSG00000101104 @ hg19

Biotype
protein_coding
Gene Symbol
PABPC1L
Description
poly(A) binding protein, cytoplasmic 1-like [Source:HGNC Symbol;Acc:15797]
Coordinates
chr20:43538703-43587676:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
93.05
27.21
0
Alternative 3'ss
58
chr20:43559101-43559158
+
6.95
27.21
0
Alternative 3'ss
0
NA
+
4.94
34.48
0
Alternative 3'ss
41
chr20:43566702-43566742
+
94.83
34.48
0
Alternative 5'ss
0
NA
+
70.3
40.58
0
Alternative 5'ss
102
chr20:43561074-43561175
+
29.7
40.58
0
Exon Skipping
179
chr20:43561176-43561354
+
30.73
38.91
0
Exon Skipping
63
chr20:43563142-43563204
+
3.01
38.79
0
Exon Skipping
75
chr20:43567315-43567389
+
77.47
48.16
0
Exon Skipping
116
chr20:43545397-43545512
+
95.02
22.7
0
Exon Skipping
83
chr20:43565535-43565617
+
9.95
40.98
0
Exon Skipping
131
chr20:43566702-43566832
+
96.52
24.81
0
Exon Skipping
62
chr20:43581284-43581345
+
24.2
35.91
0
Exon Skipping
194
chr20:43560474-43560667
+
19.12
22.34
0
Exon Skipping
91
chr20:43560983-43561073
+
38.95
77.57
0
Intron Retention
6203
chr20:43552898-43559100
+
13.45
25.96
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000054582 Pabpc1l 1-to-1
Mouse mm9 ENSMUSG00000054582 Pabpc1l 1-to-1
Rat rn6 ENSRNOG00000012750 Pabpc1l 1-to-1
Cow bosTau6 ENSBTAG00000016849 PABPC1L 1-to-1
Chicken galGal4 ENSGALG00000004123 1-to-1
Chicken galGal3 ENSGALG00000004123 PABPC1L 1-to-1
Zebrafish danRer10 ENSDARG00000002597 pabpc1l 1-to-1
Fruitfly dm6 FBgn0265297 pAbp 6-to-1