HsaEX0045157 @ hg19
Exon Skipping
Gene
ENSG00000101104 | PABPC1L
Description
poly(A) binding protein, cytoplasmic 1-like [Source:HGNC Symbol;Acc:15797]
Coordinates
chr20:43559101-43561822:+
Coord C1 exon
chr20:43559101-43559367
Coord A exon
chr20:43560474-43560667
Coord C2 exon
chr20:43561698-43561822
Length
194 bp
Sequences
Splice sites
3' ss Seq
CTACACTATTCTACCCTAAGATG
3' ss Score
3.59
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTGATGACAGAGGGTGGCCACAGCAAGGGGTTTGGCTTTGTGTGTTTTTCCTCCCCAGAAGAGGCGACAAAGGCCGTGACAGAGATGAACGGGCGCATCGTGGGCACCAAGCCACTCTACGTGGCACTGGCCCAGCGCAAAGAGGAGCGGAAGGCCATCTTGACCAACCAGTACATGCAGCGCCTCTCCACCATGCGGACCCTGAGCAACCCCCTCCTGGGCTCCTTTCAGCAGCCCTCCAGCTACTTCCTGCCTGCCATGCCCCAG
Seq A exon
ATGCCAATGTCTACTGAGACTCTCCAAAACAGGCACAGATTATCCAGCATTTCCCCAGCTTAGATGGTCATTTTTTTGTGGGATGCCTGTTAACATCTCCCCTGGATGTTAATGTTCTGAGGAGCATGGTTTGGGAAAGGACCTCGTGGGACTTACAGGAAGTAGAAAGATGTCACCCATTAAAGGCCACCACG
Seq C2 exon
CTGCCTACCCTCCAGGTGCCTCAATGGTCCGGCCACCAGTTGTGCCTCGGCGCCCCCCGGCCCACATCAGCAGTGTCAGGCAGGCCTCCACCCAGGTGCCACGCACGGTGCCTCATACCCAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101104_MULTIEX3-1/3=C1-3
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=0.850 C2=NA
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(56.5=43.8)
A:
NO
C2:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGGCCATCTTGACCAACC
R:
TCTCTGGGTATGAGGCACCG
Band lengths:
244-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)