HsaEX1026839 @ hg38
Exon Skipping
Gene
ENSG00000101104 | PABPC1L
Description
poly(A) binding protein cytoplasmic 1 like [Source:HGNC Symbol;Acc:HGNC:15797]
Coordinates
chr20:44938674-44959035:+
Coord C1 exon
chr20:44938674-44938748
Coord A exon
chr20:44951899-44952080
Coord C2 exon
chr20:44958337-44959035
Length
182 bp
Sequences
Splice sites
3' ss Seq
CTCTTTGTGGTTCTCCGAAGGCA
3' ss Score
8.53
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
ATAGACGAGGCAGTGGCCGTGCTGCAGGCACACCAGGCTATGGAGCAGCCGAAGGCGTACATGCACTGAAACCAG
Seq A exon
GCAAGGAATTCCACCTCTTCTGAGCTGAAACAGGCACCAAGGGGATTGAGGGCAGCTTCAGGCGCCACTCAGGCCCAAGCGAGTCCATGAGAGCTCTGGTCATTCTGGAAAAGAAGGCAGGATTGCAGGGAGGTTTCCAGCTGGGTCAAGAAGATATTTCTCCTTTCACACACCCATGGGAG
Seq C2 exon
GCCCAGAGACGGAAAGTACAAAGACTAGTAAAATACATCCTTGCCCTTAAGGAGCTAAGTACCCAAAACCTGTAATCCATCTTGAGTCACCAGAGTACGGTTGCTCAGAAACAGCAGTGGTGCGGTGGAAAGGGCATCAACCCTGCGATCCGGACAAGTCACTCCATCCCTCTGATCATGCGTGCCCACCTACCACATGAGGATATCACTTCATAGACTTGCTGGAAGGGTTCATTGTGTTAGCCTGTTCCCTGAGCTCTCTTCGTGATCAAGAAGACTGATCAGATAAATCAAGAGACTTGCCCAAAATTACCTAGGAAATCTGTAGCAGCAGCAGAACCAAACTCCGGTCCTTGCTAAATCTAGATACCAGGCTAGCTTTTCTATGGACCCAGAATTAACCCATACAAATGTACAAGCTTTTCCAGACCAGCTGGGGTGAGATGAATGAAAATGGCAGCAACATCAATACCTCAGCTTCTTCAGCAACTTCATCAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101104_MULTIEX2-6/8=4-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.180 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0065813=PABP=PD(9.7=30.4)
A:
PF0065813=PABP=PD(7.1=16.7)
C2:
PF0065813=PABP=PD(5.9=15.4)
Main Inclusion Isoform:
ENST00000372819fB21815
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCGTACATGCACTGAAACC
R:
ATGAACCCTTCCAGCAAGTCT
Band lengths:
258-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains