HsaEX1026838 @ hg38
Exon Skipping
Gene
ENSG00000101104 | PABPC1L
Description
poly(A) binding protein cytoplasmic 1 like [Source:HGNC Symbol;Acc:HGNC:15797]
Coordinates
chr20:44938674-44959035:+
Coord C1 exon
chr20:44938674-44938748
Coord A exon
chr20:44950677-44950758
Coord C2 exon
chr20:44958337-44959035
Length
82 bp
Sequences
Splice sites
3' ss Seq
ACCGCACATTTTCATCCTAGAGA
3' ss Score
6.02
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATAGACGAGGCAGTGGCCGTGCTGCAGGCACACCAGGCTATGGAGCAGCCGAAGGCGTACATGCACTGAAACCAG
Seq A exon
AGAAGAGTGGGGAACACTTACCAGGCTCCCACAAACCAGAGTGAATGCTACCCATGACCAGAGAGGCATTCTCCTGTAGAAG
Seq C2 exon
GCCCAGAGACGGAAAGTACAAAGACTAGTAAAATACATCCTTGCCCTTAAGGAGCTAAGTACCCAAAACCTGTAATCCATCTTGAGTCACCAGAGTACGGTTGCTCAGAAACAGCAGTGGTGCGGTGGAAAGGGCATCAACCCTGCGATCCGGACAAGTCACTCCATCCCTCTGATCATGCGTGCCCACCTACCACATGAGGATATCACTTCATAGACTTGCTGGAAGGGTTCATTGTGTTAGCCTGTTCCCTGAGCTCTCTTCGTGATCAAGAAGACTGATCAGATAAATCAAGAGACTTGCCCAAAATTACCTAGGAAATCTGTAGCAGCAGCAGAACCAAACTCCGGTCCTTGCTAAATCTAGATACCAGGCTAGCTTTTCTATGGACCCAGAATTAACCCATACAAATGTACAAGCTTTTCCAGACCAGCTGGGGTGAGATGAATGAAAATGGCAGCAACATCAATACCTCAGCTTCTTCAGCAACTTCATCAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101104_MULTIEX2-5/8=4-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.180 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0065813=PABP=PD(9.7=30.4)
A:
NA
C2:
PF0065813=PABP=PD(5.9=15.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGGCGTACATGCACTGAA
R:
GGGTTGATGCCCTTTCCACC
Band lengths:
169-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains