HsaEX0045158 @ hg38
Exon Skipping
Gene
ENSG00000101104 | PABPC1L
Description
poly(A) binding protein cytoplasmic 1 like [Source:HGNC Symbol;Acc:HGNC:15797]
Coordinates
chr20:44910062-44933185:+
Coord C1 exon
chr20:44910062-44930726
Coord A exon
chr20:44932342-44932432
Coord C2 exon
chr20:44933072-44933185
Length
91 bp
Sequences
Splice sites
3' ss Seq
GGTCTTCTTTTCCCATGCAGCCT
3' ss Score
8.32
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
TCAGTAAATGGGGGTGCACGCTACATCCCTCCATCACAGCTTGCTAAACGGGGGTGCACACTACATCCCTCGAACACAGCTTAGTAAACAGGGGTGCACGCTACATCCCTCCATCACAGCTTTCTCGCGGGCCTGCCCAGTGCTGGGCTTAGCCCATGGGGAGGAGGGAGGCAGCGCAGCCCCAGGAGCCTTCCTTCCCCACCCCAGCAGCTCTTGTCTTGTCTTGCTTTTAGGTGATGACAGAGGGTGGCCACAGCAAGGGGTTTGGCTTTGTGTGTTTTTCCTCCCCAGAAGAGGCGACAAAGGCCGTGACAGAGATGAACGGGCGCATCGTGGGCACCAAGCCACTCTACGTGGCACTGGCCCAGCGCAAAGAGGAGCGGAAGGCCATCTTGACCAACCAGTACATGCAGCGCCTCTCCACCATGCGGACCCTGAGCAACCCCCTCCTGGGCTCCTTTCAGCAGCCCTCCAGCTACTTCCTGCCTGCCATGCCCCAG
Seq A exon
CCTCCAGCCCAGGCTGCATACTATGGCTGTGGCCCAGTGACACCCACCCAGCCTGCCCCCAGGTGGACATCCCAGCCACCTAGACCTTCCT
Seq C2 exon
GTGCCTCAATGGTCCGGCCACCAGTTGTGCCTCGGCGCCCCCCGGCCCACATCAGCAGTGTCAGGCAGGCCTCCACCCAGGTGCCACGCACGGTGCCTCATACCCAGAGAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101104-'18-37,'18-30,20-37
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.110 A=0.677 C2=0.992
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(73.2=80.0)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCAACCAGTACATGCAGC
R:
CTGCCTGACACTGCTGATGTG
Band lengths:
175-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development