DreEX6051460 @ danRer10
Exon Skipping
Gene
ENSDARG00000002597 | pabpc1l
Description
poly(A) binding protein, cytoplasmic 1-like [Source:ZFIN;Acc:ZDB-GENE-030131-5836]
Coordinates
chr8:45337369-45339417:+
Coord C1 exon
chr8:45337369-45337638
Coord A exon
chr8:45337734-45337809
Coord C2 exon
chr8:45339301-45339417
Length
76 bp
Sequences
Splice sites
3' ss Seq
CTGCATTTCTAATCCGCCAGGTT
3' ss Score
6.04
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GTGATGACTGATGGAGGCCACAGTAGAGGCTTTGGATTTGTTTGTTTTTCCTCTCCCGAAGAGGCCACAAAGGCAGTGACTGAGATGAACGGGCGTATTGTTAGCACTAAACCACTTTATGTGGCTCTTGCCCAAAGAAAAGAGGAACGAAAGGCCATCCTCACTAATCAGTACATACAGAGACTAGCCAGCATCCGAGCTATCCCTGGCCCTGCAATACCCACCACCTACCAGCAGGGCTCCGGTTACTACATGACCTCTGTGCCACAA
Seq A exon
GTTCGCTCTTTTTATAATGCTGTACCAAACCTGCGCCCTGCACCACGCTGGGCATCTCAAGCTCCTAGGACACAAG
Seq C2 exon
GTCCATTTCCAGCTCAGTTTGTGAGGCAAGCAGTGCCACGGAGGCCCTCCACTACCATCAGCACTGTCCGCCAGGCCTCCACTCAGGTTCCTCACATAAACAACACCCAACGAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002597-'13-10,'13-9,14-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=0.500 C2=0.950
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(56.5=43.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCCAGCATCCGAGCTATCC
R:
TGTGAGGAACCTGAGTGGAGG
Band lengths:
182-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]