RnoEX6020196 @ rn6
Exon Skipping
Gene
ENSRNOG00000012750 | Pabpc1l
Description
poly(A) binding protein, cytoplasmic 1-like [Source:RGD Symbol;Acc:1563142]
Coordinates
chr3:160430332-160432365:+
Coord C1 exon
chr3:160430332-160430580
Coord A exon
chr3:160431439-160431529
Coord C2 exon
chr3:160432249-160432365
Length
91 bp
Sequences
Splice sites
3' ss Seq
CGGATCCTCTTCCTCCACAGTCT
3' ss Score
9.08
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GTGATGACAGAAAGTAGCCACAGCAAGGGCTTTGGCTTTGTGTGCTTTTCCTCTCCAGAAGAGGCAACGAAGGCTGTGACAGAGATGAACGGGCGCATCGTGGGTACGAAACCACTGTATGTGGCCCTGGCACAGCGCAAGGAGGAGCGGAAGGCCATCTTGACCAACCAGTATAGGAGACGCCTCTCTCGCTCTGTCTTGAGCTCCTTCCAGCAGCCTACCAGCTACCTGCTCCCTGCTGTACACCAG
Seq A exon
TCTACAACCCAGACTATGTACTATAGTTCTGCCTCCATAGCCCCAATGCAACCTGACCCCAGGTGGACAGCCCAGCCTCATGGACCTTCAT
Seq C2 exon
CTACCTGCCCTCCAGCTGCCTCGGTGGTCCAGCCTCTAAGCACGGCACCGCACCCCTGTATCCACCTCAGCAGTGCCAGCCAGGCCTCCAGCCAGGTGCCTCACACGCAGAGAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012750-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=0.581 C2=0.700
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(56.5=47.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGGCCATCTTGACCAACC
R:
CTGGCACTGCTGAGGTGGATA
Band lengths:
180-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]