BtaEX6066789 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016849 | PABPC1L
Description
poly(A) binding protein, cytoplasmic 1-like [Source:HGNC Symbol;Acc:HGNC:15797]
Coordinates
chr13:74060421-74062570:+
Coord C1 exon
chr13:74060421-74060687
Coord A exon
chr13:74061726-74061810
Coord C2 exon
chr13:74062442-74062570
Length
85 bp
Sequences
Splice sites
3' ss Seq
GGTCTTTCTCTCCTACACAGCCT
3' ss Score
7.2
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GTGATGACAGAGGGTGGCCACAGCAAAGGGTTTGGCTTTGTGTGTTTTTCCTCTCCAGAAGAGGCGACCAAGGCCGTGACAGAGATGAACGGGCGCATCGTGGGCACCAAGCCACTGTACGTGGCGCTGGCCCAGCGCAAGGAAGAGCGGAAGGCCATCCTGACCAACCAGTACATGCAGCGCCTCTCCACCATGCGGGCCCTGGGTGGCCCCATCCTGGGCTCCTTCCAGCAGCCTGCCAGCTACTTCCTGCCCGCTGTGCCCCAG
Seq A exon
CCTCCAGCTCAGGCTCCCTACTATGGCTCTGGCCCACCCATCCAGCCTGCCCCCAGGTGGACGGCCCAGCCACCCAGACCGTCAT
Seq C2 exon
CCGCTTACCCACCCGGGGCCTCGGTGGTCCGGCCAGCAGCCATGTCTCGGCGCCCCTTGACCCCCGTTGGAAGCTCCAGGCAGGTCTCCACCCACGTGCCACACCTGGTGCCCCACACCCAGCGAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016849-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.090 A=0.862 C2=1.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(56.5=43.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCAACCAGTACATGCAGC
R:
GCTTCCAACGGGGGTCAAG
Band lengths:
181-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]