GgaEX0005510 @ galGal3
Exon Skipping
Gene
ENSGALG00000004123 | PABPC1L
Description
NA
Coordinates
chr20:5198742-5199974:-
Coord C1 exon
chr20:5199708-5199974
Coord A exon
chr20:5199137-5199227
Coord C2 exon
chr20:5198742-5198867
Length
91 bp
Sequences
Splice sites
3' ss Seq
AACTCATTCTCCTCCCATAGCCG
3' ss Score
7.7
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GTGATGACAGAGGGTGGCCACAGCAAAGGGTTTGGCTTTGTATGTTTTTCCTCTCCAGAAGAGGCTACCAAGGCCGTGACCGAAATGAACGGACGGATTGTTAGCACTAAGCCTCTCTACGTTGCGCTCGCGCAAAGGAAAGAGGAAAGGAAAGCAATTCTCACCAACCAGTACATGCAGCGATTGGCCACCATGAGGGCACTGCCTGGCCCTTTCCTTGGCTCCTTCCAGCCTCCCCCGGGGTATTTCCTCCCCCCCATCCCTCAG
Seq A exon
CCGCAAACCAGAGCTGCTTTCTACAGCCCCAGCCCAGTTGTCCCTGTCCGTCCTGCCACTCGCTGGAGTGCGCAGCCCACCCGGCCTCCCC
Seq C2 exon
CGTACCCTGCAGCCACACCCATCCTGAGGGCTGCTGTGCAGCCCCGGCGCCTGCTGTCCAACATCAGCACCATGAGACAGGCGTCCACCCAAGTGCCTCGTGTGCCCCCCCAGGCGCAGAGAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004123_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.090 A=0.677 C2=0.744
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(56.5=43.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGTACATGCAGCGATTGG
R:
GCCTGTCTCATGGTGCTGATG
Band lengths:
183-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]