MmuEX6106807 @ mm9
Exon Skipping
Gene
ENSMUSG00000054582 | Pabpc1l
Description
poly(A) binding protein, cytoplasmic 1-like [Source:MGI Symbol;Acc:MGI:1922908]
Coordinates
chr2:163868053-163870116:+
Coord C1 exon
chr2:163868053-163868301
Coord A exon
chr2:163869286-163869376
Coord C2 exon
chr2:163870000-163870116
Length
91 bp
Sequences
Splice sites
3' ss Seq
CAGATCGTCTTCTTCCACAGTCT
3' ss Score
7.42
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GTGATGACAGAAAGTAGCCACAGCAAGGGCTTTGGCTTTGTGTGCTTTTCCTCTCCAGAAGAGGCAACGAAGGCCGTGACGGAGATGAACGGGCGCATCGTGGGCACGAAACCGCTCTATGTGGCCCTGGCACAGCGCAAGGAGGAGCGGAAGGCCATCTTGACCAACCAGTATAGGCGACGCCCCTCTCACCCTGTCTTGAGCTCCTTCCAGCAGCCTACCAGCTACCTGCTCCCTGCTGTACCCCAG
Seq A exon
TCTACAGCCCAGGCTGTGTACTACAGTTCTGGCTCCATAACTCCAATGCAACCTGACCCCAGGTGGACAGCCCAGCCACATGGACCTCCAT
Seq C2 exon
CTACCTGCCCTCCAGCTGCCTCTGTGGTCCAGCCTCTAAGCACGACGCAGCATCCCTGTATCCACCTGAGGGGTGCCAGCCAGGTCTCCAGCCAGGTGCCTCACACGCAGAGAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054582-'9-11,'9-10,10-11=AN
Average complexity
A_C1
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=0.613 C2=0.838
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(56.5=47.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCACCCTGTCTTGAGCTCC
R:
CTACTCTCTGCGTGTGAGGCA
Band lengths:
180-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: