HsaEX0046977 @ hg19
Exon Skipping
Gene
ENSG00000077684 | PHF17
Description
PHD finger protein 17 [Source:HGNC Symbol;Acc:30027]
Coordinates
chr4:129732443-129752965:+
Coord C1 exon
chr4:129732443-129732551
Coord A exon
chr4:129737522-129737618
Coord C2 exon
chr4:129752888-129752965
Length
97 bp
Sequences
Splice sites
3' ss Seq
TATTTTTTCTTTTTTTGCAGTTC
3' ss Score
10
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
GCTCAAAGTGGCGGAGCGCGGCGGCGGGAGGCAGGTGCACGGCACCCGCCAGTGGGGGTGCCTCAACTTCCGCGGGCGTTTAAATAGCAGCCTCTCTCCCCTCCCACCG
Seq A exon
TTCATAGCCCTGATGAAGCAAGTTACTCTGCTCTCCTAATAAATGCAAGAAAATGACCTTGGAGGGCCTTTTTAATTACACATAGAAGTGACAATTT
Seq C2 exon
GCTGCCTGCTGTTTCCCGGGGAGATCATGAAACGAGGTCGCCTTCCCAGCAGCAGTGAGGATTCTGACGACAATGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000077684-'4-9,'4-7,7-9
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF105134=EPL1=PU(7.4=50.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGGGGTGCCTCAACTTC
R:
TGCCATTGTCGTCAGAATCCT
Band lengths:
137-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)