HsaEX0046977 @ hg38
Exon Skipping
Gene
ENSG00000077684 | JADE1
Description
jade family PHD finger 1 [Source:HGNC Symbol;Acc:HGNC:30027]
Coordinates
chr4:128809623-128831810:+
Coord C1 exon
chr4:128809623-128809877
Coord A exon
chr4:128816367-128816463
Coord C2 exon
chr4:128831733-128831810
Length
97 bp
Sequences
Splice sites
3' ss Seq
TATTTTTTCTTTTTTTGCAGTTC
3' ss Score
10
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
CGTTTTGGCAAGGGATTAAAGTGCTCCCCCCTGTGGCAGCAGTGACCCAGAAATGAGTTTGATTCACATAGTCCTTCCTCCATAACAAGCCAAACGCCAGACCGAGAGTGCCTCCGTGCGCGAGTGCCCGGTGTGTGCGCGCCGGCGAGAGCAGGGGCCCGCCCGGCTCCCCGCCCGCCGCGGCCCGAACTCATGCAGCTCCGAGCGAGCGAGCGGCGCCCAGCCCAGCGCCTCGGCCGAACCCCTCCGCAGCAG
Seq A exon
TTCATAGCCCTGATGAAGCAAGTTACTCTGCTCTCCTAATAAATGCAAGAAAATGACCTTGGAGGGCCTTTTTAATTACACATAGAAGTGACAATTT
Seq C2 exon
GCTGCCTGCTGTTTCCCGGGGAGATCATGAAACGAGGTCGCCTTCCCAGCAGCAGTGAGGATTCTGACGACAATGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000077684_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF105134=EPL1=PU(4.4=38.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGAGAGTGCCTCCGTG
R:
ATGATCTCCCCGGGAAACAGC
Band lengths:
183-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development