HsaEX0047215 @ hg19
Exon Skipping
Gene
ENSG00000144362 | PHOSPHO2
Description
phosphatase, orphan 2 [Source:HGNC Symbol;Acc:28316]
Coordinates
chr2:170553871-170558218:+
Coord C1 exon
chr2:170553871-170554041
Coord A exon
chr2:170554403-170554492
Coord C2 exon
chr2:170557456-170558218
Length
90 bp
Sequences
Splice sites
3' ss Seq
ATTCTGCATTTAAATTTCAGGGA
3' ss Score
7.93
5' ss Seq
CAGGTGATA
5' ss Score
4.58
Exon sequences
Seq C1 exon
GAGTTAAGAAGTTTCCATTATTTTGCTCCAAACCAGAAGACTCTGTTCCCTGTATATAGAATAGGAGTAATATTTGAAAACAACTGGCTGATGTTTAAAACTGAAGATTGTCATGATTGTTTATCCTAATCCCAATGCTGAAGTAAGATTGTCTTGGAAATACTAAGTTGG
Seq A exon
GGAACCAGTCAGAAGCATCTGGATTAGGCATTTAGTGATACAAGGATCCAGAATAACAAAAACTATGTACCAGCCACATTCACACAACAG
Seq C2 exon
GGTAATCCAAATCTATTTCTGGAACCATGAAAATTTTGCTAGTTTTTGACTTTGACAATACAATCATAGATGACAATAGTGACACTTGGATTGTACAATGTGCTCCCAACAAAAAGCTTCCTATTGAACTACGTGATTCTTATCGAAAAGGATTTTGGACAGAATTTATGGGCAGAGTCTTTAAGTATTTGGGAGATAAGGGTGTAAGAGAACATGAAATGAAAAGAGCAGTGACATCATTGCCTTTCACTCCAGGGATGGTGGAACTCTTCAACTTTATAAGAAAGAATAAGGATAAATTTGACTGCATTATTATTTCAGATTCAAATTCGGTCTTCATAGATTGGGTTTTAGAAGCTGCCAGTTTTCATGACATATTTGATAAAGTGTTTACAAATCCAGCAGCTTTTAATAGCAATGGTCATCTCACTGTTGAAAATTATCATACTCATTCTTGCAATAGATGCCCAAAGAATCTTTGCAAAAAGGTAGTTTTGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144362_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF068887=Put_Phosphatase=WD(100=97.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTAATCCCAATGCTGAAGT
R:
AGGAAGCTTTTTGTTGGGAGCA
Band lengths:
171-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)