HsaEX0047394 @ hg19
Exon Skipping
Gene
ENSG00000135845 | PIGC
Description
phosphatidylinositol glycan anchor biosynthesis, class C [Source:HGNC Symbol;Acc:8960]
Coordinates
chr1:172362274-172369056:-
Coord C1 exon
chr1:172368959-172369056
Coord A exon
chr1:172366304-172366412
Coord C2 exon
chr1:172362274-172363550
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTAATTTTTCCACCCCAAAGGGC
3' ss Score
6.21
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
CAAAAAAAAAGAGCATGAGGAATTTGAAGACTGAGAGATGAGTTGTGTAGCACCAACATTTTCTTTCTGCCTGACCTTCATACCTGATGAATTAAAAG
Seq A exon
GGCAATAATTAAGGTGGAATTTGCCTCACATGAAGTTTTATTATTTTAGTTATTAAAATAGTTTCCAACACTACTGAGAAGCAAAAAGCAATTCTCGTTGTTTTAAGAA
Seq C2 exon
CATAGGATGTTTGGAAGAGTGAGATAGGGGACACATTGAAAACAGAGAGGCAATCTGAAGGCTACCTTGACGCATCTGCAAAGCTCCCAGATTCTGACTTTCACAAGACTTGCTTTCTGTTTCTGGGCCTCGCCTAAACAGACTGCCAGTCATCCGAACCGTGGCAGGATGGAGATGTTTGTGTAAGGTAGACTCAAGTTTGCAAGACTCAAGAAGGAAACCACCAAACTAATTTTACTTTCACTTAAACCAGATTGAAACCAAGACTTGAAGAATTAAAAACTTTGACATTAACCATTGATTCACTCCAATGAAATAATTGTGTTATAGCCAGAATCATGGTGAAATTGGAACAAGGCTTTTGATGGGATTTTTAATTGAGGGACTTATATTAAATTGGATATTTTCTTTAATGAACAGCATGTGGCCAAAATTCTATTTTCATTAAAGTATATTAAGCATCATGACAACTCATATTAAACCTGCAACAAATGATTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135845-'7-8,'7-7,8-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGAGTTGTGTAGCACCAACA
R:
AAACATCTCCATCCTGCCACG
Band lengths:
243-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)