HsaEX6034931 @ hg19
Exon Skipping
Gene
ENSG00000135845 | PIGC
Description
phosphatidylinositol glycan anchor biosynthesis, class C [Source:HGNC Symbol;Acc:8960]
Coordinates
chr1:172362274-172413226:-
Coord C1 exon
chr1:172410597-172413226
Coord A exon
chr1:172384434-172384514
Coord C2 exon
chr1:172362274-172363550
Length
81 bp
Sequences
Splice sites
3' ss Seq
TCTCTGATGATTAATCTTAGATC
3' ss Score
5.12
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
TGTACTCCCCGGAGCTATGTGGGGGTCACACTGCTTTTTGCATTTTCAGCCGTGGGAGGCCTACTGTCCATTAGTGCTGTGGGAGCCGTACTCTTTGCCCTTCTGCTGATGTCTATCTCATGTCTGTGTCCATTCTACCTCATTCGCTTGCAGCTTTTTAAAGAAAACATTCATGGGCCTTGGGATGAAGCTGAAATCAAGGAAGACTTGTCCAGGTTCCTCAGTTAAATTAGGACATCCATTACATTATTAAAGCAAGCTGATAGATTAGCCTCCTAACTAGTATAGAACTTAAAGACAGAGTTCCATTCTGGAAGCAGCATGTCATTGTGGTAAGAGAATAGAGATCAAAACCAAAAAAAATGAACCAAAGGCTTGGGTGGTGAGGGTGCTTATCCTTTCTGTTATTTTGTAGATGAAAAAACTTTCTGGGGACCTCTTGAATTACATGCTGTAACATATGAAGTGATGTGGTTTCTATTAAAAAAATAACACATCCA
Seq A exon
ATCAACCTGGATGCCTTCCTTCACAATAATCTCATGGAGGTAATTTAAAGAATCCCTTTTTTGGAGAGTCAGAGAGAAAAG
Seq C2 exon
CATAGGATGTTTGGAAGAGTGAGATAGGGGACACATTGAAAACAGAGAGGCAATCTGAAGGCTACCTTGACGCATCTGCAAAGCTCCCAGATTCTGACTTTCACAAGACTTGCTTTCTGTTTCTGGGCCTCGCCTAAACAGACTGCCAGTCATCCGAACCGTGGCAGGATGGAGATGTTTGTGTAAGGTAGACTCAAGTTTGCAAGACTCAAGAAGGAAACCACCAAACTAATTTTACTTTCACTTAAACCAGATTGAAACCAAGACTTGAAGAATTAAAAACTTTGACATTAACCATTGATTCACTCCAATGAAATAATTGTGTTATAGCCAGAATCATGGTGAAATTGGAACAAGGCTTTTGATGGGATTTTTAATTGAGGGACTTATATTAAATTGGATATTTTCTTTAATGAACAGCATGTGGCCAAAATTCTATTTTCATTAAAGTATATTAAGCATCATGACAACTCATATTAAACCTGCAACAAATGATTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135845-'5-8,'5-4,6-8=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF064326=GPI2=WD(100=90.9)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGAGGGTGCTTATCCTT
R:
GCCTTCAGATTGCCTCTCTGT
Band lengths:
183-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)