HsaEX0047396 @ hg19
Exon Skipping
Gene
ENSG00000135845 | PIGC
Description
phosphatidylinositol glycan anchor biosynthesis, class C [Source:HGNC Symbol;Acc:8960]
Coordinates
chr1:172345694-172356097:-
Coord C1 exon
chr1:172355921-172356097
Coord A exon
chr1:172347271-172347398
Coord C2 exon
chr1:172345694-172345776
Length
128 bp
Sequences
Splice sites
3' ss Seq
AATGTTGGCTTATCCACCAGAGG
3' ss Score
4.69
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
TACTGGTGACAGTAACAGTTTCCCTCTGTCTTTTGGCTGTCCACACTGAAGGATGATAGAGATGAGTAGAAGAAGGCCAAACCCAGCCATCACCAGAACAGGGCCTGCTGGCTTTGTGAGCATTTCACAATATTGTCTGGAGCTGTTTGGCTTATAGAAGAGGGAAGGTACTATGAG
Seq A exon
AGGCTGAGCTGGAATGGCTTCTTCATCATTAAGGGCTGACCTATTGGCTTGGCATTGAAATCAATTTAGAACAAATGGTCTCCATTTCAAGTCAGCTTGAACCATCTAAGCCCCAGAACATGACACAG
Seq C2 exon
AAAAAAAGAAGCAGTAAACTGCCCCTTCTACCAATGTCTAAGATGAACGGGAAAAATGCATATAAATGGAATTTTTCTTTTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135845_MULTIEX1-2/3=1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGACAGTAACAGTTTCCCT
R:
TCCATTTATATGCATTTTTCCCGT
Band lengths:
244-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)