HsaEX0047454 @ hg19
Exon Skipping
Gene
ENSG00000007541 | PIGQ
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:HGNC Symbol;Acc:14135]
Coordinates
chr16:632248-633035:+
Coord C1 exon
chr16:632248-632309
Coord A exon
chr16:632484-632611
Coord C2 exon
chr16:632883-633035
Length
128 bp
Sequences
Splice sites
3' ss Seq
CCCCTCCCCCTTACCCCCAGGGC
3' ss Score
11.17
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
CTGGCGTGAAGTTCCGTGTCCTCCGGCACGAGGCCGGCAGGCCCCTCCGCCTCCTGATGCAG
Seq A exon
GGCCTGAGGACACTGGTGTGGTCCTGTGGATGGGGCCCATTCTGCCCTGTGTCGGAGGCGCCCTTGGCTGGCTGGGGCTGCCCTGGGCCCCACAGGGCTCAAGTTCTGGGTGGAACAGAACCGACTGA
Seq C2 exon
ATAAACCCACTGCCCTACAGCCGCGTGGTGCACACCTACCGCCTCCCCAGCTGTGGCTGCCACCCCAAGCACTCCTGGGGCGCCCTGTGCCGCAAGCTGTTCCTTGGGGAGCTCATCTACCCCTGGAGGCAGAGAGGGGACAAGCAGGACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007541-'22-24,'22-23,23-24
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.163 C2=0.166
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTGAAGTTCCGTGTCCTC
R:
AGTCCTGCTTGTCCCCTCTC
Band lengths:
210-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)