GgaEX6014704 @ galGal4
Exon Skipping
Gene
ENSGALG00000008995 | MAMDC4
Description
MAM domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24083]
Coordinates
chr17:558852-559476:-
Coord C1 exon
chr17:559346-559476
Coord A exon
chr17:559168-559273
Coord C2 exon
chr17:558852-558968
Length
106 bp
Sequences
Splice sites
3' ss Seq
ACCCCCACCCTCACCCCCAGGTC
3' ss Score
9.72
5' ss Seq
CGGGTGTGT
5' ss Score
5.31
Exon sequences
Seq C1 exon
GTTTCCTCGCTGTTGCTGTCACGGAGCACTCCACGGACATGACGCACCTGGCCTGGCACACGCGGGGGCACGGCAGCACAGCCTGGGAGCACGTCCACATCCCGCTGGGGGAGAGGGCCCGGCCCTTCCAG
Seq A exon
GTCGAGCTGCTGGGGATGGCGGAGCTGCAGGACCCCGAGGCCATCGCCATCGCCAACGTGACGTTCGTGCAGTGCAACCCTGGCGTGGAGCCCCCCGAGGCTGCGG
Seq C2 exon
AGCTGTCCTGCAACTTCGAGGCGGATCTGTGCGGTTGGTACCCGGACCGGGGCAGCGACTTCCAGTGGGTCCGCAGCACAGGACAGGGGCAGGGCTCCGACCACACCACCGGATCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008995-'21-29,'21-28,22-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.205 A=0.000 C2=0.250
Domain overlap (PFAM):
C1:
PF0062918=MAM=FE(27.7=100)
A:
PF0062918=MAM=PD(16.8=72.2)
C2:
PF0062918=MAM=PU(23.2=90.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCTCGCTGTTGCTGTCAC
R:
GATCCGGTGGTGTGGTCGG
Band lengths:
245-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]