RnoEX6015880 @ rn6
Exon Skipping
Gene
ENSRNOG00000016584 | Mamdc4
Description
MAM domain containing 4 [Source:RGD Symbol;Acc:708583]
Coordinates
chr3:2789706-2790262:-
Coord C1 exon
chr3:2790138-2790262
Coord A exon
chr3:2789946-2790057
Coord C2 exon
chr3:2789706-2789822
Length
112 bp
Sequences
Splice sites
3' ss Seq
TCTCCCCTATCTGCCTAAAGCTG
3' ss Score
7.03
5' ss Seq
AAGGTTCTT
5' ss Score
3.87
Exon sequences
Seq C1 exon
GCTTCTTGGCACTGGCTGTGGTGGAGAATGGCTTCCGGGAGCTGCTGTGGCAGGCTCCAAGCAGCAGCAGTGGGGGCTGGACACTACAGAAGATTCTTCTTGGGGCACGGCGCCGGCCATTCCAG
Seq A exon
CTGGAGTTCGTCAGTCTGGTGGACTTGGATGGCCCTGGCCAACAGGGGGCTGGGGTGGATAATGTGACCCTGAGAGACTGCAACCCCATGGTGACCACTGAGAGTGACCAAG
Seq C2 exon
AGGTCTCCTGTAACTTTGAACGGGACTCCTGCAGCTGGCACACAGGCCACCTCACAGATGCCCACTGGCACCGTGTAAAAAGCCACGGCTCTCAGTATGACCACACCACCGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016584-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.184 C2=0.050
Domain overlap (PFAM):
C1:
PF0062918=MAM=FE(26.3=100)
A:
PF0062918=MAM=PD(17.9=73.7)
C2:
PF0062918=MAM=PU(23.2=90.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCTTGGCACTGGCTGT
R:
CTTGGCCGGTGGTGTGGT
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]