BtaEX0021108 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021550 | MAMDC4
Description
Bos taurus MAM domain containing 4 (MAMDC4), mRNA. [Source:RefSeq mRNA;Acc:NM_001143873]
Coordinates
chr11:106328679-106329233:-
Coord C1 exon
chr11:106329133-106329233
Coord A exon
chr11:106328939-106329050
Coord C2 exon
chr11:106328679-106328795
Length
112 bp
Sequences
Splice sites
3' ss Seq
CTCCCTCATGCCCCACGAAGCTG
3' ss Score
3.34
5' ss Seq
CAGGTGCTT
5' ss Score
4.83
Exon sequences
Seq C1 exon
AGGGCAGCCGCCGCGAGCTGGTGTGGCAGGCCCTGGGCACCACCGCTGGGGGCTGGAAGGTGGACAGGGTCCTTCTCGGGGCTCGCCGCCGGCCGTTTCGG
Seq A exon
CTGGAGTTGGTTGGGCTGGTGGATTTGGACGGCCCCGGGCAGCAGGGCGCAGGGGTGGACGACGTGACCCTGACGGGCTGCAGCCCCACAGCAGCCGCTGAGGAAGACTCAG
Seq C2 exon
AGGTCTCCTGTAACTTTGAGCGGGGGGCCTGCGGCTGGCACACCGGCCACCTAACAGATGCCCACTGGCACCGGGTCGAGAGCCGTGGCCCGAGGTACGACCACACCACGGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021550-'17-15,'17-14,18-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.879 C2=0.275
Domain overlap (PFAM):
C1:
NA
A:
PF0062918=MAM=PD(2.3=5.9)
C2:
PF0062918=MAM=PD(1.2=2.5),PF0062918=MAM=PU(23.2=90.0)
Main Inclusion Isoform:
ENSBTAT00000032582fB4029
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCTGGAAGGTGGACA
R:
CTTGGCCCGTGGTGTGGT
Band lengths:
170-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development