MmuEX0027600 @ mm10
Exon Skipping
Gene
ENSMUSG00000026941 | Mamdc4
Description
MAM domain containing 4 [Source:MGI Symbol;Acc:MGI:2685841]
Coordinates
chr2:25566452-25567028:-
Coord C1 exon
chr2:25566904-25567028
Coord A exon
chr2:25566712-25566823
Coord C2 exon
chr2:25566452-25566568
Length
112 bp
Sequences
Splice sites
3' ss Seq
TCTCCCCTATCTGCCTAAAGCTG
3' ss Score
7.03
5' ss Seq
AAGGTTTCT
5' ss Score
0.28
Exon sequences
Seq C1 exon
GCTTCTTGGCACTGGTTGTGGTGGAGAATGGCTTCCGGGAGCTGCTGTGGCAAGCCCCAGGCGGCGGCAGCGGGAGCTGGACAGAGGAGAAGATTATTCTCGGGGCACGGCGCCGGCCGTTCCAG
Seq A exon
CTGGAGTTTGTCAGTCTGGTGGACTTGGATGGCCCTGGCCAGCAGGGGGCTGGGGTGGACAATGTGACTCTGAGAGACTGCAACCCCATGGTGACCACTGAAAGTGACCAAG
Seq C2 exon
AGCTCTCCTGTAACTTTGAACGGGACTCCTGCAGCTGGCATACAGGCCACCTCACAGATGCCCACTGGCACCGTATAAAAAGCCACGGCTCTCAGCTTGACCACACAACTGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026941_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.048 A=0.158 C2=0.050
Domain overlap (PFAM):
C1:
PF0062918=MAM=FE(26.3=100)
A:
PF0062918=MAM=PD(17.9=73.7)
C2:
PF0062918=MAM=PD(3.4=7.5),PF0062918=MAM=PU(22.6=87.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCTTGGCACTGGTTGTGG
R:
CTTGGCCAGTTGTGTGGTC
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types