HsaEX0047661 @ hg19
Exon Skipping
Gene
ENSG00000186088 | PION
Description
pigeon homolog (Drosophila) [Source:HGNC Symbol;Acc:28042]
Coordinates
chr7:77026663-77033932:-
Coord C1 exon
chr7:77033876-77033932
Coord A exon
chr7:77028785-77028854
Coord C2 exon
chr7:77026663-77026732
Length
70 bp
Sequences
Splice sites
3' ss Seq
TCCCACCTTCTGTCATGTAGGAC
3' ss Score
8.38
5' ss Seq
CTGGTAATT
5' ss Score
5.99
Exon sequences
Seq C1 exon
GATGATAAGGGAAATGTCGTCTTTGGATTATATGATTGTCAAACCAGACAAAATGAG
Seq A exon
GACTTCCCTGGTAGTGCATACAAGAGTGAACATGACCTAAACTGGTTGGATACAAGAGAATACTTTGCTG
Seq C2 exon
CTTCTATATACCTTTGAGAAAGACTTGCAAGTTTTCAGTTGCTCTGTCAACAGTGAAAGGACTTTGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186088_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF105044=DUF2452=FE(26.5=100),PF135111=DUF4124=FE(66.7=100)
A:
PF105044=DUF2452=PD(32.4=91.7)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGATAAGGGAAATGTCGTCTTTGG
R:
CAAGCAAAGTCCTTTCACTGTTGA
Band lengths:
127-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)