HsaEX0047657 @ hg19
Exon Skipping
Gene
ENSG00000186088 | PION
Description
pigeon homolog (Drosophila) [Source:HGNC Symbol;Acc:28042]
Coordinates
chr7:77026663-77035422:-
Coord C1 exon
chr7:77035346-77035422
Coord A exon
chr7:77033876-77033932
Coord C2 exon
chr7:77026663-77026732
Length
57 bp
Sequences
Splice sites
3' ss Seq
ATCTGGTTAATTTTTTTTAGGAT
3' ss Score
8.36
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
ATGTTTTAGAAAACGATTATGAGAGCTTACATGTATTAAATGTTGAAAGAAATGGAAATATTATTTATACCTATAAG
Seq A exon
GATGATAAGGGAAATGTCGTCTTTGGATTATATGATTGTCAAACCAGACAAAATGAG
Seq C2 exon
CTTCTATATACCTTTGAGAAAGACTTGCAAGTTTTCAGTTGCTCTGTCAACAGTGAAAGGACTTTGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186088-'3-5,'3-3,4-5
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF105044=DUF2452=PU(36.8=96.2),PF135111=DUF4124=PU(25.9=26.9)
A:
PF105044=DUF2452=FE(26.5=100),PF135111=DUF4124=FE(66.7=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAACGATTATGAGAGCTTACATG
R:
GTCCTTTCACTGTTGACAGAGCA
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)