MmuEX0035214 @ mm9
Exon Skipping
Gene
ENSMUSG00000039934 | Pion
Description
pigeon homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:2442259]
Coordinates
chr5:20700218-20713128:+
Coord C1 exon
chr5:20700218-20700294
Coord A exon
chr5:20701863-20701919
Coord C2 exon
chr5:20713059-20713128
Length
57 bp
Sequences
Splice sites
3' ss Seq
AACATCTGGTTAATTTTTAGGAC
3' ss Score
7.89
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTGTTTTAGAAACAACTTATGGGAGCTTACGTGTACTAAACATCGAAAGAAATGGAAACATTATTTATACCTATAAG
Seq A exon
GACAATAAGGGAAACGCTGTTTTTGGATTATATGATTGCCAAACCAGACAGAATGAG
Seq C2 exon
CATCTGTACACCTTTGAGAAGGACATGCAAGCTGTCAGTTGTTCAGTCAACAGTGAGAGAACAGTGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039934_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACTTATGGGAGCTTACGTGT
R:
GCACTGTTCTCTCACTGTTGACT
Band lengths:
133-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: