DreEX6002484 @ danRer10
Exon Skipping
Gene
ENSDARG00000045481 | gsap
Description
gamma-secretase activating protein [Source:ZFIN;Acc:ZDB-GENE-041210-216]
Coordinates
chr4:20498838-20500620:-
Coord C1 exon
chr4:20500559-20500620
Coord A exon
chr4:20499017-20499073
Coord C2 exon
chr4:20498838-20498863
Length
57 bp
Sequences
Splice sites
3' ss Seq
ATTTCCCAATCCTTGTTTAGGGG
3' ss Score
8.37
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GTGTTCTTGAGCCTCGAATTCTGAGTGTGGAGAGAGATGGAGGAGTCGTGTACTCATGGAGA
Seq A exon
GGGGCAACAGGAACTACAAGAATTGGGAAATATGATCCTCACAGTACAGAGAATAAG
Seq C2 exon
CTCCTCTACACATTTGACAAGCAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045481-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.211 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGAGCCTCGAATTCTGAGTG
R:
ACTTGCTTGTCAAATGTGTAGAGGA
Band lengths:
84-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]