RnoEX6012354 @ rn6
Exon Skipping
Gene
ENSRNOG00000028801 | Gsap
Description
gamma-secretase activating protein [Source:RGD Symbol;Acc:1563271]
Coordinates
chr4:10499153-10508165:-
Coord C1 exon
chr4:10508098-10508165
Coord A exon
chr4:10506936-10506992
Coord C2 exon
chr4:10499153-10499222
Length
57 bp
Sequences
Splice sites
3' ss Seq
AACCTCTGGTTAATTTTTAGGAC
3' ss Score
7.78
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
AAACAACTCTTGGGAGCTTACGTGTACTAAACATCGAAAGAAATGGAGACATTATTTATACCTATAAG
Seq A exon
GACAACAAAGGAAATGCGGTCTTCGGAATATTTGACTGCCAAACCAGAGAAAATGAG
Seq C2 exon
CATCTGTACACCTTCGAGAAGGACATGCAAGCTGTCAGTTGCTCAGTCAACAGCGAGAGGACAGTGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028801-'1-3,'1-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACTCTTGGGAGCTTACGTG
R:
CACTGTCCTCTCGCTGTTGAC
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]