RnoEX6012353 @ rn6
Exon Skipping
Gene
ENSRNOG00000028801 | Gsap
Description
gamma-secretase activating protein [Source:RGD Symbol;Acc:1563271]
Coordinates
chr4:10506936-10517848:-
Coord C1 exon
chr4:10517669-10517848
Coord A exon
chr4:10508098-10508165
Coord C2 exon
chr4:10506936-10506992
Length
68 bp
Sequences
Splice sites
3' ss Seq
ATATATTCTGGGTGTTTCAGAAA
3' ss Score
6.68
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GGCGGGGAGGAAGAGAGGCGGCTGCAGGCTGGGAGGTGTGAGCCTGCCCGGAATGTCCGCCCCGCCGCTGTTTGCGAGCCATGGCTCTGCGGCTGGTCACCCACTTCGACGTGCTGGCGGACGTGCTCCCGAGTCTGCTCGTCCAGGCAGCGACAGCAGATGAAGGAGACGAAGGCGCAG
Seq A exon
AAACAACTCTTGGGAGCTTACGTGTACTAAACATCGAAAGAAATGGAGACATTATTTATACCTATAAG
Seq C2 exon
GACAACAAAGGAAATGCGGTCTTCGGAATATTTGACTGCCAAACCAGAGAAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028801-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGCCTGCCCGGAATG
R:
TCCGAAGACCGCATTTCCTTT
Band lengths:
170-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]