MmuEX6016092 @ mm10
Exon Skipping
Gene
ENSMUSG00000039934 | Gsap
Description
gamma-secretase activating protein [Source:MGI Symbol;Acc:MGI:2442259]
Coordinates
chr5:21186255-21196101:+
Coord C1 exon
chr5:21186255-21186459
Coord A exon
chr5:21194400-21194476
Coord C2 exon
chr5:21196045-21196101
Length
77 bp
Sequences
Splice sites
3' ss Seq
CCTGACTTAATATATTCCAGGTG
3' ss Score
8.43
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AGAACCCTGAACCGAAAGCAGCCTGGGGAGGCGGGGAGGAAGGAGAGGTGGTTGTAGGCTGAGAGGTGTAAGCCCGCCCGGAATGCCCGCCGCTGCTGCTTGGGAGCCATGGCTCTGCGGCTGGTCACTCACTTCGATGTGCTGGAGGACGTGCTCCCGAGTCTGCTCACACAGGCGGCGACAACGGACGAAGGAGACAGAGCAG
Seq A exon
GTGTTTTAGAAACAACTTATGGGAGCTTACGTGTACTAAACATCGAAAGAAATGGAAACATTATTTATACCTATAAG
Seq C2 exon
GACAATAAGGGAAACGCTGTTTTTGGATTATATGATTGCCAAACCAGACAGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039934-'1-12,'1-1,2-12=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGCTGAGAGGTGTAAGCCC
R:
TCCAAAAACAGCGTTTCCCTT
Band lengths:
178-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types