DreEX6002483 @ danRer10
Exon Skipping
Gene
ENSDARG00000045481 | gsap
Description
gamma-secretase activating protein [Source:ZFIN;Acc:ZDB-GENE-041210-216]
Coordinates
chr4:20499017-20501207:-
Coord C1 exon
chr4:20500778-20501207
Coord A exon
chr4:20500559-20500620
Coord C2 exon
chr4:20499017-20499073
Length
62 bp
Sequences
Splice sites
3' ss Seq
ACTGTGTTTAATGTGTGCAGGTG
3' ss Score
7.97
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
TTGGTGAATTCAGTGACTTTCGGTTTGTTGCGGGTAGAATATTATTGATCGTGATGCTTTTTAGTTTACCGGGTCTATCACTCTTGTCATTACAAGCTCCTAAAGTTCGCTTCAGTACGTCCGAATCGTTTTAAAACGCCGGTTTCAGCAAAGGGAGTTATTCACTAATAGATGTCTGATGGTGTTCAGCGTACTGACGGTGTTCGGCTCGTCGATAAACTGTAGGAATACATTTAATATGTTACGCTATAGAAGTCAGTGTGTTCAGTCATAAAGTTTGCGTGGAGTTCTCTGTCCTGAACGCGTGAAATCAGGCCACTTCTGCTAAATCTCTGCAGGACAAGACACATGTTGAGATTAAACCCCACCTTCGACATTCAAAGAGATGTTGTGTCAAGCATTTTGGCCAAGGAGGAAAGGGCGAATATAG
Seq A exon
GTGTTCTTGAGCCTCGAATTCTGAGTGTGGAGAGAGATGGAGGAGTCGTGTACTCATGGAGA
Seq C2 exon
GGGGCAACAGGAACTACAAGAATTGGGAAATATGATCCTCACAGTACAGAGAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045481-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.211
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAATCAGGCCACTTCTGCT
R:
TCTTGTAGTTCCTGTTGCCCC
Band lengths:
146-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]