GgaEX1027594 @ galGal4
Exon Skipping
Gene
ENSGALG00000008312 | GSAP
Description
gamma-secretase activating protein [Source:HGNC Symbol;Acc:HGNC:28042]
Coordinates
chr1:12486935-12494327:+
Coord C1 exon
chr1:12486935-12487019
Coord A exon
chr1:12489720-12489793
Coord C2 exon
chr1:12494271-12494327
Length
74 bp
Sequences
Splice sites
3' ss Seq
GCCTTTTGTTATAATTTCAGATA
3' ss Score
8.78
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
ATGCTGCTTCAGCTGGCGGCCGAGTTTGACCTGCAGAGGGATGTGGTGCCCTGGCTGGCGGCGCGGGGCTGGGCCGTGGCTCTAG
Seq A exon
ATACTTCTGAGAAATCATCAGCACTTTACATTGTAAATGTTGAAAGAAATGGAAAAATTATTTACACCTGGAAG
Seq C2 exon
GGAAATCAGAGAAGTACCCATATTGGATTGTATGACCTTCAAACGAAAGAAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCGGCCGAGTTTGAC
R:
TCATTTTCTTTCGTTTGAAGGTCA
Band lengths:
129-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]