HsaEX0047713 @ hg19
Exon Skipping
Gene
ENSG00000167103 | PIP5KL1
Description
phosphatidylinositol-4-phosphate 5-kinase-like 1 [Source:HGNC Symbol;Acc:28711]
Coordinates
chr9:130683158-130687539:-
Coord C1 exon
chr9:130687386-130687539
Coord A exon
chr9:130686257-130686309
Coord C2 exon
chr9:130683158-130684393
Length
53 bp
Sequences
Splice sites
3' ss Seq
GCTGGTCATTCCACTTCCAGGAC
3' ss Score
9.07
5' ss Seq
GTGGTAACT
5' ss Score
5.08
Exon sequences
Seq C1 exon
GGCCCCAGCGGAGCTGGTTCCTCCGCCAGATGGAACTGGATACCACCTTCCTCCGGGAGCTCAACGTGCTGGATTACAGCCTCCTGATAGCCTTCCAACGTCTCCACGAGGATGAGAGGGGCCCGGGCAGCAGCCTCATCTTCCGCACGGCCAG
Seq A exon
GACGCTGACGTCATCATCATTGGCACCGTCTTCCTGTCTTCATCTCAGTAGTG
Seq C2 exon
GTCTGTGCAAGGGGCACAGAGCCCGGAAGAGTCGAGAGCCCAAAACCGCCGGCTGCTGCCCGACGCCCCCAACGCCCTACACATCCTGGACGGGCCCGAGCAGCGCTATTTCCTGGGCGTCGTGGATCTCGCCACAGTCTACGGGCTCCGCAAGCGGCTGGAGCACCTGTGGAAGACACTGCGCTACCCAGGCCGGACCTTCTCCACTGTCAGCCCGGCTCGCTACGCCCGTCGCCTCTGCCAGTGGGTGGAGGCGCACACGGAGTGACGGGCGCCCGGCCCCACTCTCCGGATCTGGACGATGGGCTCACGCCAGGAACGCCGGTTCCCCCGGGCCCGGGCATCTCGCCTGCGCTTCCTCCTGATGGTCGCCAGAGGGCAGCATCCCCTAACTAATACCGTAACCGCGCAGTCCCGTTTGACGGTGGTGCCGTGCCCAGCATCGTGCCAAGGACTCCCCTACTTTAGCTCATTTAATCCTCAAAAAATGCTATTATTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167103-'16-21,'16-20,17-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.327
Domain overlap (PFAM):
C1:
PF0150413=PIP5K=FE(26.8=100)
A:
PF0150413=PIP5K=FE(8.2=100)
C2:
PF0150413=PIP5K=PD(32.1=96.7)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTCAACGTGCTGGATTA
R:
GGTTTTGGGCTCTCGACTCTT
Band lengths:
146-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)