HsaEX0047713 @ hg38
Exon Skipping
Gene
ENSG00000167103 | PIP5KL1
Description
phosphatidylinositol-4-phosphate 5-kinase like 1 [Source:HGNC Symbol;Acc:HGNC:28711]
Coordinates
chr9:127920879-127925260:-
Coord C1 exon
chr9:127925107-127925260
Coord A exon
chr9:127923978-127924030
Coord C2 exon
chr9:127920879-127922114
Length
53 bp
Sequences
Splice sites
3' ss Seq
GCTGGTCATTCCACTTCCAGGAC
3' ss Score
9.07
5' ss Seq
GTGGTAACT
5' ss Score
5.08
Exon sequences
Seq C1 exon
GGCCCCAGCGGAGCTGGTTCCTCCGCCAGATGGAACTGGATACCACCTTCCTCCGGGAGCTCAACGTGCTGGATTACAGCCTCCTGATAGCCTTCCAACGTCTCCACGAGGATGAGAGGGGCCCGGGCAGCAGCCTCATCTTCCGCACGGCCAG
Seq A exon
GACGCTGACGTCATCATCATTGGCACCGTCTTCCTGTCTTCATCTCAGTAGTG
Seq C2 exon
GTCTGTGCAAGGGGCACAGAGCCCGGAAGAGTCGAGAGCCCAAAACCGCCGGCTGCTGCCCGACGCCCCCAACGCCCTACACATCCTGGACGGGCCCGAGCAGCGCTATTTCCTGGGCGTCGTGGATCTCGCCACAGTCTACGGGCTCCGCAAGCGGCTGGAGCACCTGTGGAAGACACTGCGCTACCCAGGCCGGACCTTCTCCACTGTCAGCCCGGCTCGCTACGCCCGTCGCCTCTGCCAGTGGGTGGAGGCGCACACGGAGTGACGGGCGCCCGGCCCCACTCTCCGGATCTGGACGATGGGCTCACGCCAGGAACGCCGGTTCCCCCGGGCCCGGGCATCTCGCCTGCGCTTCCTCCTGATGGTCGCCAGAGGGCAGCATCCCCTAACTAATACCGTAACCGCGCAGTCCCGTTTGACGGTGGTGCCGTGCCCAGCATCGTGCCAAGGACTCCCCTACTTTAGCTCATTTAATCCTCAAAAAATGCTATTATTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167103_MULTIEX1-4/5=3-5
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.350
Domain overlap (PFAM):
C1:
PF0150413=PIP5K=FE(26.8=100)
A:
PF0150413=PIP5K=FE(8.1=100)
C2:
PF0150413=PIP5K=PD(32.1=96.7)
Main Inclusion Isoform:
ENST00000388747fB5241
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTCAACGTGCTGGATTA
R:
GGTTTTGGGCTCTCGACTCTT
Band lengths:
146-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development