HsaEX0047719 @ hg19
Exon Skipping
Gene
ENSG00000179761 | PIPOX
Description
pipecolic acid oxidase [Source:HGNC Symbol;Acc:17804]
Coordinates
chr17:27276888-27372025:+
Coord C1 exon
chr17:27276888-27277712
Coord A exon
chr17:27367701-27367808
Coord C2 exon
chr17:27371877-27372025
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTCCATAGAGC
3' ss Score
11.85
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
TGCGCTTTTCTGCCTCGTCCGTCTTGGGGGGAGCCAGCAGAGCTTGGATTTGCTGCACACACATACAAACGGCGTGTGTGCACACTCGGAGCTCCCGGGCGGTCCGTCGCCCCCCCGGCGCGGTTTCTCCGTCACCCACCCCTCTCCCCCCTTTTGTCCTTCTTCCTCCCATCCAGGCTGCTCCCAGAATCTCTCAGCCCCCGGAACCAGGGGGAGCCCACCCTAACCGCGTTCCTGCAGCACAACAACGAGAACAGCTTCTTCCAAATGGGGAGGATCAAGGGTAGGGGGATGGGAAGAGGGTGCGCGGTTCCCTTCTTGCCACTTCCTTGTATGGACAGTGGGGGACTCCAAAGACCCGCTCGGGAGAGGCCCAAAGCCCGGTACCCGGACGTGCTGGGGGAAGCACAAAGGGGCCAACAAGAAGGGGGTGGGGAGGCCTGCCGGTGCAACGAGATGGAGTGGGCTGGCGCCTCGGGAGAGCGAATCGAGGGCGGCGG
Seq A exon
AGCTGGAATCTTGCTCCATTGCCCAGGCTGGAGTACAATGGTGTGATTATAGCTCACTGCAGCCTCAAACTCCTGGGCTCAAGTGACCCTCCTGCCTCAGCCTCCCAA
Seq C2 exon
TTCTTTCTACCACACTCCCGAGGAAGCTCCCATGGACAAAGCCGGATAATCCGAAAGGCGTACCTGGAAGACTTTTACACCCGGATGATGCATGAGTGCTATCAGATATGGGCCCAGCTGGAGCACGAGGCTGGAACCCAATTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179761_MULTIEX1-3/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0126619=DAO=PU(10.6=95.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTATGGACAGTGGGGGACTC
R:
GTCTTCCAGGTACGCCTTTCG
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)