HsaINT0148429 @ hg19
Intron Retention
Gene
ENSG00000063015 | SEZ6
Description
seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:15955]
Coordinates
chr17:27283177-27283485:-
Coord C1 exon
chr17:27283368-27283485
Coord A exon
chr17:27283280-27283367
Coord C2 exon
chr17:27283177-27283279
Length
88 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CAGGCTTCTCTGCCCCACAGGCT
3' ss Score
8.72
Exon sequences
Seq C1 exon
TTGCCAAGGCACCTGCTGCCTCCAGCACCCTGGATGCTGCCCACATTGCAGCTGCCATCTTCTTGCCACTGGTGGCGATGGTGTTGTTGGTAGGAGGTGTATACTTCTACTTCTCCAG
Seq A exon
GTGAGTCTGGCTTCTCTTTCTGCTCTGCATACCTGCATACCTCACTCCTACCCAGTGCTCCTGACTTGCAGGCTTCTCTGCCCCACAG
Seq C2 exon
GCTCCAGGGAAAAAGCTCCCTGCAGCTGCCCCGCCCCCGCCCCCGCCCCTACAACCGCATTACCATAGAGTCAGCGTTTGACAATCCAACTTACGAGACTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000063015-SEZ6:NM_001098635:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=1.000 C2=0.067
Domain overlap (PFAM):
C1:
PF086935=SKG6=PU(81.8=90.0)
A:
PF0043115=CUB=FE(1.2=100)
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTGCAGCTGCCATCTTCT
R:
AGTTGGATTGTCAAACGCTGA
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)