DreINT0133582 @ danRer10
Intron Retention
Gene
ENSDARG00000079414 | sez6b
Description
seizure related 6 homolog b [Source:ZFIN;Acc:ZDB-GENE-110628-3]
Coordinates
chr15:24598003-24600245:+
Coord C1 exon
chr15:24598003-24598111
Coord A exon
chr15:24598112-24600145
Coord C2 exon
chr15:24600146-24600245
Length
2034 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TGTTGTATGTTTGCTCTCAGGGT
3' ss Score
9.46
Exon sequences
Seq C1 exon
TGGCCAGTGCAGACTTCAGTATGGAGGGGGCCAGTGTGGCTGTGTCCATTTTCATCCCTGTGGCCGTAATCATAATTATCATCTTGTCAATATATTTCTACTTTTCAAG
Seq A exon
GTAAGTTGCACTAGTTGCTTCAAAAAGGTTTTTACATTTATTTTAAACTTAAAGCATATGTATAGAAAAAATATTGCAAGTATTTATTTTTCTAATATGTTACAATTAAAAGGCCATGAAACCCCCCTGTCTCAGCAGGGTGTTTTCACACCTCCAGTTTGAAAAAAGTCAGGAAAGTGGTTGAGTCCAGCTTTGTTTAGGGGGGGTGATGAGTGGCGAAAGAGAAGGGTTTGCATGAAAAGGGGAGTTTCAGTATGAGCACTACAGCTGATTTCACACTGGCAACACGGACATAGGTGAGATAGACAGGGATTCGAAGAGCAGCATTTACAGCAGATCTGAGACCTGTGTGGAAGTGGAGGATTTTTAGCCCATAATATTGTAGTGATATAACTGTAAACTTAGTAACTAAATCATTTTGACTAAGGTATATCTGTAAAAACTAAAAGAGTACTGCTGACGATACTAACTTTGCCATCTGAATAAAAATAAACAAAGAGATACTTACCAAATCCGTGGAGACAGGACAATCAACACAAACTGGAACCGCATTTTTTTTAAAGAAGACAAGTGGCAAATCTGGATTTTCCCATTTTCAGATTTAAAAAGCTCTTACAAACATATGTTCCTTACAAACATTTTTTTGTCGCGTGTTAGCAGACCACTGTAATTCACACATGTGAGTTCACACGCGAGCAGTACTATCATAGCTGGATATGGAAACAAAACCTTTGTTGCAGCACATCAATAAACGCAACACTGACGATACACATCTCCAAACATTTCTTGTTCTATTACTTGTTTGAATTATGGTTGGCAACACAACACGGCGTCTCTGAACATAGGTAAAACAGTTTTCAAAGCTATGTCATCCATATTAATAAAGTTGCATATTGTTCACAAAAGATGATTGGTTTGAACCAAGTCTTTCTTATGAATTAATGAACAGATGTGCTGAAAACTCAATGATGTCACTATGTGCCAGCTGGTAGAGACAGCCAATTTCCACTCTGGAATTTACACAATGATCTCATTGTCATGACATAGATTCAAAATTTCTTTTTAAACTGGAAGAACGAATTTGCTCTAAACAATGCAAAAACAATCAATTTCCACTTTTCTGTGAAATATCTGTGTGCTTATAGTGTTTTTAGCATCTTAAAACATATATATGACTTTCAACATCTCAAAAAATGTGTTTTAGTGTTTCGAGACCGTTTAAGTTGTTATACATTTCTATAGACAATTCTGAGGGGCAAAAATTAATAATGTTACAAAATATTTTTTAATTGCTTATTAATAGTTTGACTTTTATGTATTTTCAATTTTGATAATTTTGTCATTTGTCATCTCAAAGTAGATTTAGTTTGAATTTTAAATGTTTTTGGTTAATTAGTCTATATTACTTATTTATTTATCCTGCACTTATCCGTATCCACTTATCCTGCACTTGCTGCTATTGCACTCCTGGTTAGACCTAGACTGCATTTCGTTGCTTTATACCTGTACATGTGTAGTGACAATAAAATTTAATCTAATCTAAAAATCTAATCTTATTGTATTATTTTATAATATATTCAAATGTGCATATACTGTGTTATGAATAAAAATATTAAAATATGAATACATGCATTTTACAATATTACTGTTTTTGAATCAAATAAATGCAGCCTAAAAGAATAAATAAAAAATGCTTTTTCATTACAAACCATTAAAATATATTATATATATTTGCACTATATAACAAAATATCAAACCAAGTGTGACTTTTCACACTTTGTACGTCAAAAATATTTAGACTTAAAAAATTTGATCTGAAGTGTGAATTTTTCGAGGAACTAAATTTATTAAGTAGAAAAAGTAATCAGCCAAACGACATTAGTAATGACAAAAGGTTGAGTACCTTGTGGCTTGACATTTTATTAAGGAATGCAATGACATTTGTGACACTGGCCAATTATGAAGATTACTTCAAATCTCTGTCCTTCAGTATAAACCAAAGCAGATGAATTGCTGTTGTATGTTTGCTCTCAG
Seq C2 exon
GGTGCAGGGAAAATCTCTCCGGATGTCCATGTCAACGTCGCCACAGTATGATCACATTAGAGGAGAGTCTGCTTTTGAAAACCCCATTTATGAGACCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079414:ENSDART00000155502:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF086935=SKG6=WD(100=83.8)
A:
NA
C2:
PF086935=SKG6=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]