HsaINT0148429 @ hg38
Intron Retention
Gene
ENSG00000063015 | SEZ6
Description
seizure related 6 homolog [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr17:28956159-28956467:-
Coord C1 exon
chr17:28956350-28956467
Coord A exon
chr17:28956262-28956349
Coord C2 exon
chr17:28956159-28956261
Length
88 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CAGGCTTCTCTGCCCCACAGGCT
3' ss Score
8.72
Exon sequences
Seq C1 exon
TTGCCAAGGCACCTGCTGCCTCCAGCACCCTGGATGCTGCCCACATTGCAGCTGCCATCTTCTTGCCACTGGTGGCGATGGTGTTGTTGGTAGGAGGTGTATACTTCTACTTCTCCAG
Seq A exon
GTGAGTCTGGCTTCTCTTTCTGCTCTGCATACCTGCATACCTCACTCCTACCCAGTGCTCCTGACTTGCAGGCTTCTCTGCCCCACAG
Seq C2 exon
GCTCCAGGGAAAAAGCTCCCTGCAGCTGCCCCGCCCCCGCCCCCGCCCCTACAACCGCATTACCATAGAGTCAGCGTTTGACAATCCAACTTACGAGACTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000063015:ENST00000360295:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.086
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTGCAGCTGCCATCTTCT
R:
AGTTGGATTGTCAAACGCTGA
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains